miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 98135 0.73 0.480653
Target:  5'- cGGCACCGGcggccGUCGGCGGcaaggCCGCGGg -3'
miRNA:   3'- -CCGUGGCU-----CAGCCGUUaga--GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 97501 0.7 0.637836
Target:  5'- gGGCGCCGGGgccgccggaacguuUCGGC--UCgCCGCGAu -3'
miRNA:   3'- -CCGUGGCUC--------------AGCCGuuAGaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 96182 0.66 0.849391
Target:  5'- cGGCGCaCGAuUCGGCGcaGUa-CCGCGAc -3'
miRNA:   3'- -CCGUG-GCUcAGCCGU--UAgaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 94632 0.77 0.26975
Target:  5'- cGGCGCCGucGUCGGCGcgcgcgaacaugcggCUCCGCGAGc -3'
miRNA:   3'- -CCGUGGCu-CAGCCGUua-------------GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 91648 0.66 0.872352
Target:  5'- cGGgGCCGuGUCGcGCGAgg-CCGCGc- -3'
miRNA:   3'- -CCgUGGCuCAGC-CGUUagaGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 88263 0.66 0.854915
Target:  5'- cGGCGCCGGGgaugacgaCGGCGccgccuccuuuuuuGcgcggCUCCGCGGg -3'
miRNA:   3'- -CCGUGGCUCa-------GCCGU--------------Ua----GAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 88049 0.67 0.833082
Target:  5'- uGCACCGGcugcugCGGCGGUgC-CCGCGGAu -3'
miRNA:   3'- cCGUGGCUca----GCCGUUA-GaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 87445 0.72 0.509549
Target:  5'- cGGCGCCGGGgCGGCcgccgCCGCGGu -3'
miRNA:   3'- -CCGUGGCUCaGCCGuuagaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 85562 0.7 0.620376
Target:  5'- cGGCGCCGcgaGGuUCGGCGccgcgaccgcgGcCUCCGCGAGc -3'
miRNA:   3'- -CCGUGGC---UC-AGCCGU-----------UaGAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 79418 0.71 0.579461
Target:  5'- aGGC-CCGuGUCGGCGAgCUCgGCGc- -3'
miRNA:   3'- -CCGuGGCuCAGCCGUUaGAGgCGCuu -5'
23587 5' -56.7 NC_005261.1 + 78202 0.7 0.66143
Target:  5'- cGGCGCCGAcggCGGCGGgcUCUUCGUGu- -3'
miRNA:   3'- -CCGUGGCUca-GCCGUU--AGAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 75669 0.67 0.807257
Target:  5'- uGGCGCCGGGgcgcaugcuggCGGCGccUCUCgGCGu- -3'
miRNA:   3'- -CCGUGGCUCa----------GCCGUu-AGAGgCGCuu -5'
23587 5' -56.7 NC_005261.1 + 75573 0.68 0.751531
Target:  5'- gGGCGCUGGG-CGGCGGcgcggcgcUCgcgcgcgCCGCGGAc -3'
miRNA:   3'- -CCGUGGCUCaGCCGUU--------AGa------GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 75471 0.7 0.66143
Target:  5'- aGGCGCCGGG-CGGCGGcgCgggCCGCu-- -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUa-Ga--GGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 74889 0.68 0.732011
Target:  5'- cGGCgGCgGAGUCGGCGG-C-CCGCGc- -3'
miRNA:   3'- -CCG-UGgCUCAGCCGUUaGaGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 74713 0.67 0.833082
Target:  5'- gGGCgcggaACCGGGccgCGGCAGcggCCGCGGAc -3'
miRNA:   3'- -CCG-----UGGCUCa--GCCGUUagaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 74248 0.66 0.857252
Target:  5'- cGCGCCGAGUacgucccauucgCGcGCGcgCgUCCGCGGc -3'
miRNA:   3'- cCGUGGCUCA------------GC-CGUuaG-AGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 74050 0.72 0.529212
Target:  5'- cGCGCCGGGgggcugCGGCAG-CUgCGCGAc -3'
miRNA:   3'- cCGUGGCUCa-----GCCGUUaGAgGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 72575 0.74 0.407001
Target:  5'- gGGCGCCGAGUCccaagagGGCGAUCggCGCGc- -3'
miRNA:   3'- -CCGUGGCUCAG-------CCGUUAGagGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 71504 0.66 0.857252
Target:  5'- uGCGCgCGAaaGUCGGCGGgcUCgUCCGCGu- -3'
miRNA:   3'- cCGUG-GCU--CAGCCGUU--AG-AGGCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.