miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 70833 0.67 0.816036
Target:  5'- cGGCGCUG-GUCcuGGCGcgcgcggcGUCUUCGCGGc -3'
miRNA:   3'- -CCGUGGCuCAG--CCGU--------UAGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 70648 0.72 0.549147
Target:  5'- cGGCGCUGAGguUCGGCGccgCggCCGCGGg -3'
miRNA:   3'- -CCGUGGCUC--AGCCGUua-Ga-GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 70231 0.67 0.797415
Target:  5'- uGGCGCCGcGcgcaaacucgaccUCGGCGcgCuugUCCGCGAu -3'
miRNA:   3'- -CCGUGGCuC-------------AGCCGUuaG---AGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 69083 0.67 0.815166
Target:  5'- cGGCGCgGugcggguAGUUGGCGAcguagcUCUCgGCGAGg -3'
miRNA:   3'- -CCGUGgC-------UCAGCCGUU------AGAGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 69005 0.67 0.798318
Target:  5'- gGGCGCCGcggcuucGUUGGCGAg-UCCGUGGc -3'
miRNA:   3'- -CCGUGGCu------CAGCCGUUagAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 68625 0.66 0.849391
Target:  5'- gGGCGgCGGG-CGcGCGGUCgaaggCCGUGAGc -3'
miRNA:   3'- -CCGUgGCUCaGC-CGUUAGa----GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 67707 0.69 0.722116
Target:  5'- gGGCGCCGccgUGGCGAUCguccCCGUGGc -3'
miRNA:   3'- -CCGUGGCucaGCCGUUAGa---GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 63871 0.67 0.833082
Target:  5'- cGCuCCGAGgccuucUCGGCGAagagcauguUCUCCGUGGc -3'
miRNA:   3'- cCGuGGCUC------AGCCGUU---------AGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 62392 0.67 0.798318
Target:  5'- cGGCACCGucGUgGGgAAgagcagCUCCGCGc- -3'
miRNA:   3'- -CCGUGGCu-CAgCCgUUa-----GAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 62298 0.66 0.857252
Target:  5'- cGGCGCCGcgcGGgcgcgCGGCGGcC-CCGCGGu -3'
miRNA:   3'- -CCGUGGC---UCa----GCCGUUaGaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 60584 0.66 0.857252
Target:  5'- aGGCGCCGGccGUCGGCGAUggcgCCGg--- -3'
miRNA:   3'- -CCGUGGCU--CAGCCGUUAga--GGCgcuu -5'
23587 5' -56.7 NC_005261.1 + 60416 0.7 0.671655
Target:  5'- uGGUGCUGGGgCGGCAG-CUCgGCGGg -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUaGAGgCGCUu -5'
23587 5' -56.7 NC_005261.1 + 60097 0.69 0.681848
Target:  5'- gGGCGCCGGGgCGGCGGgggUgGCGAGc -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUagaGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 60044 0.66 0.841332
Target:  5'- cGGCGCCGAcGgcggCGGCGAagagCggcggccggUCCGCGGg -3'
miRNA:   3'- -CCGUGGCU-Ca---GCCGUUa---G---------AGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 57907 0.67 0.816036
Target:  5'- cGGgGCCGcGGUCGaGCGcGUCUaCCGUGAGc -3'
miRNA:   3'- -CCgUGGC-UCAGC-CGU-UAGA-GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 57421 0.71 0.559203
Target:  5'- cGGCGCUGGGcUCGGCGGggcUCUaCCGCa-- -3'
miRNA:   3'- -CCGUGGCUC-AGCCGUU---AGA-GGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 56721 0.69 0.702101
Target:  5'- uGGCGCCGGcggCGGCGcgCgcgCCGCGc- -3'
miRNA:   3'- -CCGUGGCUca-GCCGUuaGa--GGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 56541 0.69 0.681848
Target:  5'- cGGCGCCGGGcccggacgggCGGCAGUCgugCCccaGCGGc -3'
miRNA:   3'- -CCGUGGCUCa---------GCCGUUAGa--GG---CGCUu -5'
23587 5' -56.7 NC_005261.1 + 55960 0.66 0.841332
Target:  5'- cGGCGCCGGGUCucccGCGAgcgCCGCc-- -3'
miRNA:   3'- -CCGUGGCUCAGc---CGUUagaGGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 55228 0.67 0.816036
Target:  5'- aGGCGgCGAGggCGGCAGcaccgcagCcgCCGCGAGg -3'
miRNA:   3'- -CCGUgGCUCa-GCCGUUa-------Ga-GGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.