miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 136596 0.68 0.74182
Target:  5'- cGGCGCUGGGgcUCGGgGAgccggaCUUCGCGGAg -3'
miRNA:   3'- -CCGUGGCUC--AGCCgUUa-----GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 23787 0.7 0.671655
Target:  5'- aGGUugUGGGUgcgcagguaGGCGAUCgCCGCGAAg -3'
miRNA:   3'- -CCGugGCUCAg--------CCGUUAGaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 60416 0.7 0.671655
Target:  5'- uGGUGCUGGGgCGGCAG-CUCgGCGGg -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUaGAGgCGCUu -5'
23587 5' -56.7 NC_005261.1 + 60097 0.69 0.681848
Target:  5'- gGGCGCCGGGgCGGCGGgggUgGCGAGc -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUagaGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 56541 0.69 0.681848
Target:  5'- cGGCGCCGGGcccggacgggCGGCAGUCgugCCccaGCGGc -3'
miRNA:   3'- -CCGUGGCUCa---------GCCGUUAGa--GG---CGCUu -5'
23587 5' -56.7 NC_005261.1 + 117601 0.69 0.681848
Target:  5'- cGGCgaACCGGGcCGGCAGUC-CCG-GAu -3'
miRNA:   3'- -CCG--UGGCUCaGCCGUUAGaGGCgCUu -5'
23587 5' -56.7 NC_005261.1 + 56721 0.69 0.702101
Target:  5'- uGGCGCCGGcggCGGCGcgCgcgCCGCGc- -3'
miRNA:   3'- -CCGUGGCUca-GCCGUuaGa--GGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 67707 0.69 0.722116
Target:  5'- gGGCGCCGccgUGGCGAUCguccCCGUGGc -3'
miRNA:   3'- -CCGUGGCucaGCCGUUAGa---GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 45619 0.68 0.74182
Target:  5'- cGCGcCCGGGgcccCGGCAcgCgCCGCGAGc -3'
miRNA:   3'- cCGU-GGCUCa---GCCGUuaGaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 78202 0.7 0.66143
Target:  5'- cGGCGCCGAcggCGGCGGgcUCUUCGUGu- -3'
miRNA:   3'- -CCGUGGCUca-GCCGUU--AGAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 109060 0.7 0.66143
Target:  5'- gGGCGCCGGGcccuggccUUGGCuggaUCCGCGGg -3'
miRNA:   3'- -CCGUGGCUC--------AGCCGuuagAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 34699 0.71 0.56931
Target:  5'- gGGgGCCGAGgaggCGGCGGaugCCGCGGAc -3'
miRNA:   3'- -CCgUGGCUCa---GCCGUUagaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 105182 0.82 0.149726
Target:  5'- cGGCGCCGAGUCcuGGCc--CUCCGCGGAc -3'
miRNA:   3'- -CCGUGGCUCAG--CCGuuaGAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 122095 0.75 0.358017
Target:  5'- cGGCAUCgGGGUCGGC-AUCgcggCCGCGGu -3'
miRNA:   3'- -CCGUGG-CUCAGCCGuUAGa---GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 4530 0.74 0.434368
Target:  5'- cGGCGCCgGGGUCGcGCAG-CUCCcaGCGGAg -3'
miRNA:   3'- -CCGUGG-CUCAGC-CGUUaGAGG--CGCUU- -5'
23587 5' -56.7 NC_005261.1 + 33155 0.73 0.490199
Target:  5'- gGGCGCgGAGUCGGCGGaccCUgCCGgGGAg -3'
miRNA:   3'- -CCGUGgCUCAGCCGUUa--GA-GGCgCUU- -5'
23587 5' -56.7 NC_005261.1 + 32277 0.72 0.509549
Target:  5'- gGGCGCCGAGgccaucgaCGGCGcgCU-CGCGGAg -3'
miRNA:   3'- -CCGUGGCUCa-------GCCGUuaGAgGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 87445 0.72 0.509549
Target:  5'- cGGCGCCGGGgCGGCcgccgCCGCGGu -3'
miRNA:   3'- -CCGUGGCUCaGCCGuuagaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 36697 0.72 0.539148
Target:  5'- uGGCgGCCGAGgCGGCGcgCgaCCGCGAc -3'
miRNA:   3'- -CCG-UGGCUCaGCCGUuaGa-GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 57421 0.71 0.559203
Target:  5'- cGGCGCUGGGcUCGGCGGggcUCUaCCGCa-- -3'
miRNA:   3'- -CCGUGGCUC-AGCCGUU---AGA-GGCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.