miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 23787 0.7 0.671655
Target:  5'- aGGUugUGGGUgcgcagguaGGCGAUCgCCGCGAAg -3'
miRNA:   3'- -CCGugGCUCAg--------CCGUUAGaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 60416 0.7 0.671655
Target:  5'- uGGUGCUGGGgCGGCAG-CUCgGCGGg -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUaGAGgCGCUu -5'
23587 5' -56.7 NC_005261.1 + 108377 0.68 0.757308
Target:  5'- cGGCGCCGcgcGGcCGGCGAgcacggcgcgcagCUCgGCGAGc -3'
miRNA:   3'- -CCGUGGC---UCaGCCGUUa------------GAGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 49683 0.68 0.751531
Target:  5'- cGGCGCuCGGGuacUCGGUcGUCUCCaCGAu -3'
miRNA:   3'- -CCGUG-GCUC---AGCCGuUAGAGGcGCUu -5'
23587 5' -56.7 NC_005261.1 + 13291 0.68 0.749597
Target:  5'- gGGCGCCGGcacagcgcgcgCGGCGGagcCUCCGCGGc -3'
miRNA:   3'- -CCGUGGCUca---------GCCGUUa--GAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 101516 0.68 0.74182
Target:  5'- cGGUcCCGGGUagggcCGGCGGUCagCGCGGGg -3'
miRNA:   3'- -CCGuGGCUCA-----GCCGUUAGagGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 37089 0.68 0.74182
Target:  5'- cGCGCCGccgcgCGGCAGcCUCgCGCGAGg -3'
miRNA:   3'- cCGUGGCuca--GCCGUUaGAG-GCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 136596 0.68 0.74182
Target:  5'- cGGCGCUGGGgcUCGGgGAgccggaCUUCGCGGAg -3'
miRNA:   3'- -CCGUGGCUC--AGCCgUUa-----GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 45619 0.68 0.74182
Target:  5'- cGCGcCCGGGgcccCGGCAcgCgCCGCGAGc -3'
miRNA:   3'- cCGU-GGCUCa---GCCGUuaGaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 67707 0.69 0.722116
Target:  5'- gGGCGCCGccgUGGCGAUCguccCCGUGGc -3'
miRNA:   3'- -CCGUGGCucaGCCGUUAGa---GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 56721 0.69 0.702101
Target:  5'- uGGCGCCGGcggCGGCGcgCgcgCCGCGc- -3'
miRNA:   3'- -CCGUGGCUca-GCCGUuaGa--GGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 117601 0.69 0.681848
Target:  5'- cGGCgaACCGGGcCGGCAGUC-CCG-GAu -3'
miRNA:   3'- -CCG--UGGCUCaGCCGUUAGaGGCgCUu -5'
23587 5' -56.7 NC_005261.1 + 56541 0.69 0.681848
Target:  5'- cGGCGCCGGGcccggacgggCGGCAGUCgugCCccaGCGGc -3'
miRNA:   3'- -CCGUGGCUCa---------GCCGUUAGa--GG---CGCUu -5'
23587 5' -56.7 NC_005261.1 + 60097 0.69 0.681848
Target:  5'- gGGCGCCGGGgCGGCGGgggUgGCGAGc -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUagaGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 74248 0.66 0.857252
Target:  5'- cGCGCCGAGUacgucccauucgCGcGCGcgCgUCCGCGGc -3'
miRNA:   3'- cCGUGGCUCA------------GC-CGUuaG-AGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 13096 0.66 0.864907
Target:  5'- gGGCGgCGGGcUCGGCucgggggcGUCggcggCCGCGGGg -3'
miRNA:   3'- -CCGUgGCUC-AGCCGu-------UAGa----GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 101144 0.66 0.864907
Target:  5'- aGGCuGCCGcgcGG-CGGCGcgCcgCCGCGAAg -3'
miRNA:   3'- -CCG-UGGC---UCaGCCGUuaGa-GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 125301 0.66 0.864907
Target:  5'- gGGCGCCGGacccgCGGgcg-CUCCGCGGc -3'
miRNA:   3'- -CCGUGGCUca---GCCguuaGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 112125 0.66 0.872352
Target:  5'- cGGCGCUGuacCGGCAgcuaGUCgugcCCGCGAc -3'
miRNA:   3'- -CCGUGGCucaGCCGU----UAGa---GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 108626 1.08 0.002324
Target:  5'- cGGCACCGAGUCGGCAAUCUCCGCGAAg -3'
miRNA:   3'- -CCGUGGCUCAGCCGUUAGAGGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.