Results 61 - 80 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23587 | 5' | -56.7 | NC_005261.1 | + | 115752 | 0.67 | 0.824647 |
Target: 5'- cGCACaCGucGUCGGCcccGUCUCgGCGGc -3' miRNA: 3'- cCGUG-GCu-CAGCCGu--UAGAGgCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 129326 | 0.67 | 0.824647 |
Target: 5'- uGGCGCCGcGUCGcCGAccUCgCCGCGGu -3' miRNA: 3'- -CCGUGGCuCAGCcGUU--AGaGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 102471 | 0.67 | 0.824647 |
Target: 5'- aGGCGCCGGaccuccUCGGCGcgCcgCCGCGc- -3' miRNA: 3'- -CCGUGGCUc-----AGCCGUuaGa-GGCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 55228 | 0.67 | 0.816036 |
Target: 5'- aGGCGgCGAGggCGGCAGcaccgcagCcgCCGCGAGg -3' miRNA: 3'- -CCGUgGCUCa-GCCGUUa-------Ga-GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 118409 | 0.67 | 0.807257 |
Target: 5'- gGGCGCCGcAGcCGcGCuggcuGUCgccgCCGCGGAc -3' miRNA: 3'- -CCGUGGC-UCaGC-CGu----UAGa---GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 103282 | 0.67 | 0.807257 |
Target: 5'- cGCGCCGGGUgccgCGcGCAGcC-CCGCGAAg -3' miRNA: 3'- cCGUGGCUCA----GC-CGUUaGaGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 98911 | 0.66 | 0.849391 |
Target: 5'- -aCAgCGGGUCGGCGggGUCggCUGCGGGg -3' miRNA: 3'- ccGUgGCUCAGCCGU--UAGa-GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 33027 | 0.66 | 0.849391 |
Target: 5'- gGGCGCCGAugCGGag--CgUCCGCGGAg -3' miRNA: 3'- -CCGUGGCUcaGCCguuaG-AGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 33064 | 0.66 | 0.849391 |
Target: 5'- cGGCGCCGGGgacgCGGCGcuggCggCCGCc-- -3' miRNA: 3'- -CCGUGGCUCa---GCCGUua--Ga-GGCGcuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 112125 | 0.66 | 0.872352 |
Target: 5'- cGGCGCUGuacCGGCAgcuaGUCgugcCCGCGAc -3' miRNA: 3'- -CCGUGGCucaGCCGU----UAGa---GGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 125301 | 0.66 | 0.864907 |
Target: 5'- gGGCGCCGGacccgCGGgcg-CUCCGCGGc -3' miRNA: 3'- -CCGUGGCUca---GCCguuaGAGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 101144 | 0.66 | 0.864907 |
Target: 5'- aGGCuGCCGcgcGG-CGGCGcgCcgCCGCGAAg -3' miRNA: 3'- -CCG-UGGC---UCaGCCGUuaGa-GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 13096 | 0.66 | 0.864907 |
Target: 5'- gGGCGgCGGGcUCGGCucgggggcGUCggcggCCGCGGGg -3' miRNA: 3'- -CCGUgGCUC-AGCCGu-------UAGa----GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 74248 | 0.66 | 0.857252 |
Target: 5'- cGCGCCGAGUacgucccauucgCGcGCGcgCgUCCGCGGc -3' miRNA: 3'- cCGUGGCUCA------------GC-CGUuaG-AGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 71504 | 0.66 | 0.857252 |
Target: 5'- uGCGCgCGAaaGUCGGCGGgcUCgUCCGCGu- -3' miRNA: 3'- cCGUG-GCU--CAGCCGUU--AG-AGGCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 126950 | 0.66 | 0.857252 |
Target: 5'- gGGCGCCGGGcgcgggggCGGCAGcgCgaaCCGCGc- -3' miRNA: 3'- -CCGUGGCUCa-------GCCGUUa-Ga--GGCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 125949 | 0.66 | 0.857252 |
Target: 5'- uGGCGCgGGGUcgcaCGGCAGcacuucgCUCgGCGAc -3' miRNA: 3'- -CCGUGgCUCA----GCCGUUa------GAGgCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 62298 | 0.66 | 0.857252 |
Target: 5'- cGGCGCCGcgcGGgcgcgCGGCGGcC-CCGCGGu -3' miRNA: 3'- -CCGUGGC---UCa----GCCGUUaGaGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 115291 | 0.66 | 0.849391 |
Target: 5'- gGGCagcaGCCGcaacgcGUCGGCGcacGUCUgCGCGAu -3' miRNA: 3'- -CCG----UGGCu-----CAGCCGU---UAGAgGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 115859 | 0.66 | 0.849391 |
Target: 5'- cGGCccccGCCGAGgcgcgccCGGCAAUCUCCcucGCc-- -3' miRNA: 3'- -CCG----UGGCUCa------GCCGUUAGAGG---CGcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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