Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23587 | 5' | -56.7 | NC_005261.1 | + | 103282 | 0.67 | 0.807257 |
Target: 5'- cGCGCCGGGUgccgCGcGCAGcC-CCGCGAAg -3' miRNA: 3'- cCGUGGCUCA----GC-CGUUaGaGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 12793 | 0.67 | 0.807257 |
Target: 5'- cGGCGagcUCGucGUCGGCGucgcugccGUcCUCCGCGAAg -3' miRNA: 3'- -CCGU---GGCu-CAGCCGU--------UA-GAGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 120393 | 0.67 | 0.798318 |
Target: 5'- cGCACCGAGcagagCGGCG-UCUgCGCuGAGc -3' miRNA: 3'- cCGUGGCUCa----GCCGUuAGAgGCG-CUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 69005 | 0.67 | 0.798318 |
Target: 5'- gGGCGCCGcggcuucGUUGGCGAg-UCCGUGGc -3' miRNA: 3'- -CCGUGGCu------CAGCCGUUagAGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 62392 | 0.67 | 0.798318 |
Target: 5'- cGGCACCGucGUgGGgAAgagcagCUCCGCGc- -3' miRNA: 3'- -CCGUGGCu-CAgCCgUUa-----GAGGCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 70231 | 0.67 | 0.797415 |
Target: 5'- uGGCGCCGcGcgcaaacucgaccUCGGCGcgCuugUCCGCGAu -3' miRNA: 3'- -CCGUGGCuC-------------AGCCGUuaG---AGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 16100 | 0.67 | 0.789227 |
Target: 5'- cGGCACCGGcggCGGCcacgcacgcGAUCaCCGCGGc -3' miRNA: 3'- -CCGUGGCUca-GCCG---------UUAGaGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 110174 | 0.68 | 0.779995 |
Target: 5'- cGCGCCccccGGG-CGGCAGU-UCCGCGAc -3' miRNA: 3'- cCGUGG----CUCaGCCGUUAgAGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 98456 | 0.68 | 0.769684 |
Target: 5'- cGGCGCCcgcaaaauccgacGGG-CGGCcGUcCUCCGCGGg -3' miRNA: 3'- -CCGUGG-------------CUCaGCCGuUA-GAGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 3860 | 0.68 | 0.757308 |
Target: 5'- cGGCGCCGcgcGGcCGGCGAgcacggcgcgcagCUCgGCGAGc -3' miRNA: 3'- -CCGUGGC---UCaGCCGUUa------------GAGgCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 127804 | 0.68 | 0.751531 |
Target: 5'- cGGCGCCGcGG-CGGCGGgccgcucgcgcUCgcggCCGCGAGc -3' miRNA: 3'- -CCGUGGC-UCaGCCGUU-----------AGa---GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 75573 | 0.68 | 0.751531 |
Target: 5'- gGGCGCUGGG-CGGCGGcgcggcgcUCgcgcgcgCCGCGGAc -3' miRNA: 3'- -CCGUGGCUCaGCCGUU--------AGa------GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 32078 | 0.68 | 0.74182 |
Target: 5'- cGGCGCUGGGgcUCGGgGAgccggaCUUCGCGGAg -3' miRNA: 3'- -CCGUGGCUC--AGCCgUUa-----GAGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 39237 | 0.68 | 0.732011 |
Target: 5'- cGCGCCGgcgaGGUcucCGGCGagGUCUCCaGCGAGg -3' miRNA: 3'- cCGUGGC----UCA---GCCGU--UAGAGG-CGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 74889 | 0.68 | 0.732011 |
Target: 5'- cGGCgGCgGAGUCGGCGG-C-CCGCGc- -3' miRNA: 3'- -CCG-UGgCUCAGCCGUUaGaGGCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 132063 | 0.69 | 0.722116 |
Target: 5'- uGGCgGCCGAGgucgCGGCcgccGUCgccgcugCCGCGGAg -3' miRNA: 3'- -CCG-UGGCUCa---GCCGu---UAGa------GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 98212 | 0.69 | 0.716141 |
Target: 5'- gGGCGCCGccaCGGCAgcgcggcgggcaucgAUUUCCGCGGc -3' miRNA: 3'- -CCGUGGCucaGCCGU---------------UAGAGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 106990 | 0.69 | 0.712142 |
Target: 5'- cGCACCGcGUCGGCcAggUCCGcCGAGc -3' miRNA: 3'- cCGUGGCuCAGCCGuUagAGGC-GCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 50999 | 0.69 | 0.712142 |
Target: 5'- cGGCGCgUGGGcgCGGCGGgagCUCgGCGAGc -3' miRNA: 3'- -CCGUG-GCUCa-GCCGUUa--GAGgCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 49256 | 0.69 | 0.681848 |
Target: 5'- cGCGgCGGcGUCGGCGcgCacgUCCGCGAGg -3' miRNA: 3'- cCGUgGCU-CAGCCGUuaG---AGGCGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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