Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23587 | 5' | -56.7 | NC_005261.1 | + | 118936 | 0.66 | 0.872352 |
Target: 5'- cGGCGCCGcG-CGGCugg--CCGCGGc -3' miRNA: 3'- -CCGUGGCuCaGCCGuuagaGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 55960 | 0.66 | 0.841332 |
Target: 5'- cGGCGCCGGGUCucccGCGAgcgCCGCc-- -3' miRNA: 3'- -CCGUGGCUCAGc---CGUUagaGGCGcuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 28137 | 0.67 | 0.833082 |
Target: 5'- gGGCGCCc--UCGGCGcccccAUCUCCGCc-- -3' miRNA: 3'- -CCGUGGcucAGCCGU-----UAGAGGCGcuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 108626 | 1.08 | 0.002324 |
Target: 5'- cGGCACCGAGUCGGCAAUCUCCGCGAAg -3' miRNA: 3'- -CCGUGGCUCAGCCGUUAGAGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 13096 | 0.66 | 0.864907 |
Target: 5'- gGGCGgCGGGcUCGGCucgggggcGUCggcggCCGCGGGg -3' miRNA: 3'- -CCGUgGCUC-AGCCGu-------UAGa----GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 74248 | 0.66 | 0.857252 |
Target: 5'- cGCGCCGAGUacgucccauucgCGcGCGcgCgUCCGCGGc -3' miRNA: 3'- cCGUGGCUCA------------GC-CGUuaG-AGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 126950 | 0.66 | 0.857252 |
Target: 5'- gGGCGCCGGGcgcgggggCGGCAGcgCgaaCCGCGc- -3' miRNA: 3'- -CCGUGGCUCa-------GCCGUUa-Ga--GGCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 125949 | 0.66 | 0.857252 |
Target: 5'- uGGCGCgGGGUcgcaCGGCAGcacuucgCUCgGCGAc -3' miRNA: 3'- -CCGUGgCUCA----GCCGUUa------GAGgCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 115859 | 0.66 | 0.849391 |
Target: 5'- cGGCccccGCCGAGgcgcgccCGGCAAUCUCCcucGCc-- -3' miRNA: 3'- -CCG----UGGCUCa------GCCGUUAGAGG---CGcuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 60044 | 0.66 | 0.841332 |
Target: 5'- cGGCGCCGAcGgcggCGGCGAagagCggcggccggUCCGCGGg -3' miRNA: 3'- -CCGUGGCU-Ca---GCCGUUa---G---------AGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 33027 | 0.66 | 0.849391 |
Target: 5'- gGGCGCCGAugCGGag--CgUCCGCGGAg -3' miRNA: 3'- -CCGUGGCUcaGCCguuaG-AGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 115291 | 0.66 | 0.849391 |
Target: 5'- gGGCagcaGCCGcaacgcGUCGGCGcacGUCUgCGCGAu -3' miRNA: 3'- -CCG----UGGCu-----CAGCCGU---UAGAgGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 112125 | 0.66 | 0.872352 |
Target: 5'- cGGCGCUGuacCGGCAgcuaGUCgugcCCGCGAc -3' miRNA: 3'- -CCGUGGCucaGCCGU----UAGa---GGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 98911 | 0.66 | 0.849391 |
Target: 5'- -aCAgCGGGUCGGCGggGUCggCUGCGGGg -3' miRNA: 3'- ccGUgGCUCAGCCGU--UAGa-GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 125301 | 0.66 | 0.864907 |
Target: 5'- gGGCGCCGGacccgCGGgcg-CUCCGCGGc -3' miRNA: 3'- -CCGUGGCUca---GCCguuaGAGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 62298 | 0.66 | 0.857252 |
Target: 5'- cGGCGCCGcgcGGgcgcgCGGCGGcC-CCGCGGu -3' miRNA: 3'- -CCGUGGC---UCa----GCCGUUaGaGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 117229 | 0.66 | 0.848594 |
Target: 5'- gGGCGCCGAGUCcgccucgGGUcgGGUCUcguucgCCGCGc- -3' miRNA: 3'- -CCGUGGCUCAG-------CCG--UUAGA------GGCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 63871 | 0.67 | 0.833082 |
Target: 5'- cGCuCCGAGgccuucUCGGCGAagagcauguUCUCCGUGGc -3' miRNA: 3'- cCGuGGCUC------AGCCGUU---------AGAGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 101144 | 0.66 | 0.864907 |
Target: 5'- aGGCuGCCGcgcGG-CGGCGcgCcgCCGCGAAg -3' miRNA: 3'- -CCG-UGGC---UCaGCCGUuaGa-GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 71504 | 0.66 | 0.857252 |
Target: 5'- uGCGCgCGAaaGUCGGCGGgcUCgUCCGCGu- -3' miRNA: 3'- cCGUG-GCU--CAGCCGUU--AG-AGGCGCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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