miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 74889 0.68 0.732011
Target:  5'- cGGCgGCgGAGUCGGCGG-C-CCGCGc- -3'
miRNA:   3'- -CCG-UGgCUCAGCCGUUaGaGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 55228 0.67 0.816036
Target:  5'- aGGCGgCGAGggCGGCAGcaccgcagCcgCCGCGAGg -3'
miRNA:   3'- -CCGUgGCUCa-GCCGUUa-------Ga-GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 62298 0.66 0.857252
Target:  5'- cGGCGCCGcgcGGgcgcgCGGCGGcC-CCGCGGu -3'
miRNA:   3'- -CCGUGGC---UCa----GCCGUUaGaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 39237 0.68 0.732011
Target:  5'- cGCGCCGgcgaGGUcucCGGCGagGUCUCCaGCGAGg -3'
miRNA:   3'- cCGUGGC----UCA---GCCGU--UAGAGG-CGCUU- -5'
23587 5' -56.7 NC_005261.1 + 125949 0.66 0.857252
Target:  5'- uGGCGCgGGGUcgcaCGGCAGcacuucgCUCgGCGAc -3'
miRNA:   3'- -CCGUGgCUCA----GCCGUUa------GAGgCGCUu -5'
23587 5' -56.7 NC_005261.1 + 79418 0.71 0.579461
Target:  5'- aGGC-CCGuGUCGGCGAgCUCgGCGc- -3'
miRNA:   3'- -CCGuGGCuCAGCCGUUaGAGgCGCuu -5'
23587 5' -56.7 NC_005261.1 + 115859 0.66 0.849391
Target:  5'- cGGCccccGCCGAGgcgcgccCGGCAAUCUCCcucGCc-- -3'
miRNA:   3'- -CCG----UGGCUCa------GCCGUUAGAGG---CGcuu -5'
23587 5' -56.7 NC_005261.1 + 43409 0.71 0.610115
Target:  5'- aGGCGCCGGGggCGGC---CUCCGCc-- -3'
miRNA:   3'- -CCGUGGCUCa-GCCGuuaGAGGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 43811 0.7 0.620376
Target:  5'- gGGCGCCGGG-CGcGCc--CUCCGUGGAg -3'
miRNA:   3'- -CCGUGGCUCaGC-CGuuaGAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 51368 0.7 0.638863
Target:  5'- cGGCGCgGAGUaCGcGCAGgccgugcgcgaaCUCCGCGAGc -3'
miRNA:   3'- -CCGUGgCUCA-GC-CGUUa-----------GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 108433 0.7 0.651181
Target:  5'- cGGCaaccgcgucccgGCCGAgcagcgcgucGUCGGCGAggaUCUCCGCGu- -3'
miRNA:   3'- -CCG------------UGGCU----------CAGCCGUU---AGAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 49256 0.69 0.681848
Target:  5'- cGCGgCGGcGUCGGCGcgCacgUCCGCGAGg -3'
miRNA:   3'- cCGUgGCU-CAGCCGUuaG---AGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 98212 0.69 0.716141
Target:  5'- gGGCGCCGccaCGGCAgcgcggcgggcaucgAUUUCCGCGGc -3'
miRNA:   3'- -CCGUGGCucaGCCGU---------------UAGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 127804 0.68 0.751531
Target:  5'- cGGCGCCGcGG-CGGCGGgccgcucgcgcUCgcggCCGCGAGc -3'
miRNA:   3'- -CCGUGGC-UCaGCCGUU-----------AGa---GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 110174 0.68 0.779995
Target:  5'- cGCGCCccccGGG-CGGCAGU-UCCGCGAc -3'
miRNA:   3'- cCGUGG----CUCaGCCGUUAgAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 69005 0.67 0.798318
Target:  5'- gGGCGCCGcggcuucGUUGGCGAg-UCCGUGGc -3'
miRNA:   3'- -CCGUGGCu------CAGCCGUUagAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 103282 0.67 0.807257
Target:  5'- cGCGCCGGGUgccgCGcGCAGcC-CCGCGAAg -3'
miRNA:   3'- cCGUGGCUCA----GC-CGUUaGaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 115752 0.67 0.824647
Target:  5'- cGCACaCGucGUCGGCcccGUCUCgGCGGc -3'
miRNA:   3'- cCGUG-GCu-CAGCCGu--UAGAGgCGCUu -5'
23587 5' -56.7 NC_005261.1 + 63871 0.67 0.833082
Target:  5'- cGCuCCGAGgccuucUCGGCGAagagcauguUCUCCGUGGc -3'
miRNA:   3'- cCGuGGCUC------AGCCGUU---------AGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 98911 0.66 0.849391
Target:  5'- -aCAgCGGGUCGGCGggGUCggCUGCGGGg -3'
miRNA:   3'- ccGUgGCUCAGCCGU--UAGa-GGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.