miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 35054 0.75 0.390772
Target:  5'- cGGCgGCCGcgcGG-CGGCGGUCUCCGCGc- -3'
miRNA:   3'- -CCG-UGGC---UCaGCCGUUAGAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 16100 0.67 0.789227
Target:  5'- cGGCACCGGcggCGGCcacgcacgcGAUCaCCGCGGc -3'
miRNA:   3'- -CCGUGGCUca-GCCG---------UUAGaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 110174 0.68 0.779995
Target:  5'- cGCGCCccccGGG-CGGCAGU-UCCGCGAc -3'
miRNA:   3'- cCGUGG----CUCaGCCGUUAgAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 3860 0.68 0.757308
Target:  5'- cGGCGCCGcgcGGcCGGCGAgcacggcgcgcagCUCgGCGAGc -3'
miRNA:   3'- -CCGUGGC---UCaGCCGUUa------------GAGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 127804 0.68 0.751531
Target:  5'- cGGCGCCGcGG-CGGCGGgccgcucgcgcUCgcggCCGCGAGc -3'
miRNA:   3'- -CCGUGGC-UCaGCCGUU-----------AGa---GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 39237 0.68 0.732011
Target:  5'- cGCGCCGgcgaGGUcucCGGCGagGUCUCCaGCGAGg -3'
miRNA:   3'- cCGUGGC----UCA---GCCGU--UAGAGG-CGCUU- -5'
23587 5' -56.7 NC_005261.1 + 74889 0.68 0.732011
Target:  5'- cGGCgGCgGAGUCGGCGG-C-CCGCGc- -3'
miRNA:   3'- -CCG-UGgCUCAGCCGUUaGaGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 98212 0.69 0.716141
Target:  5'- gGGCGCCGccaCGGCAgcgcggcgggcaucgAUUUCCGCGGc -3'
miRNA:   3'- -CCGUGGCucaGCCGU---------------UAGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 106990 0.69 0.712142
Target:  5'- cGCACCGcGUCGGCcAggUCCGcCGAGc -3'
miRNA:   3'- cCGUGGCuCAGCCGuUagAGGC-GCUU- -5'
23587 5' -56.7 NC_005261.1 + 103506 0.72 0.529212
Target:  5'- cGGCGCCGcGGaCGGCGGcgUCCGCGGc -3'
miRNA:   3'- -CCGUGGC-UCaGCCGUUagAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 98135 0.73 0.480653
Target:  5'- cGGCACCGGcggccGUCGGCGGcaaggCCGCGGg -3'
miRNA:   3'- -CCGUGGCU-----CAGCCGUUaga--GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 94632 0.77 0.26975
Target:  5'- cGGCGCCGucGUCGGCGcgcgcgaacaugcggCUCCGCGAGc -3'
miRNA:   3'- -CCGUGGCu-CAGCCGUua-------------GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 26381 0.67 0.807257
Target:  5'- aGGCGC--GGUUGGCGcgcacgcgCUCCGCGAc -3'
miRNA:   3'- -CCGUGgcUCAGCCGUua------GAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 21704 0.68 0.761137
Target:  5'- gGGCGCgGAG-CGGCGGgccUCgcgccgCCGCGGc -3'
miRNA:   3'- -CCGUGgCUCaGCCGUU---AGa-----GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 91648 0.66 0.872352
Target:  5'- cGGgGCCGuGUCGcGCGAgg-CCGCGc- -3'
miRNA:   3'- -CCgUGGCuCAGC-CGUUagaGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 87445 0.72 0.509549
Target:  5'- cGGCGCCGGGgCGGCcgccgCCGCGGu -3'
miRNA:   3'- -CCGUGGCUCaGCCGuuagaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 21569 0.67 0.78831
Target:  5'- cGGCGCCGcggagcaGGUCGGCGG-CgggCgCGCGGg -3'
miRNA:   3'- -CCGUGGC-------UCAGCCGUUaGa--G-GCGCUu -5'
23587 5' -56.7 NC_005261.1 + 60097 0.69 0.681848
Target:  5'- gGGCGCCGGGgCGGCGGgggUgGCGAGc -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUagaGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 60416 0.7 0.671655
Target:  5'- uGGUGCUGGGgCGGCAG-CUCgGCGGg -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUaGAGgCGCUu -5'
23587 5' -56.7 NC_005261.1 + 3034 0.67 0.789227
Target:  5'- uGCGCCGccUCGGCcaugCUCCGCGc- -3'
miRNA:   3'- cCGUGGCucAGCCGuua-GAGGCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.