miRNA display CGI


Results 61 - 80 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 97220 0.66 0.695907
Target:  5'- aCG-CUCGGaGGCGcUGGCgCCgGCccGGCCg -3'
miRNA:   3'- -GCaGAGCCgCCGC-AUCG-GGaCG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 101574 0.66 0.695907
Target:  5'- gCG-CUCGGCGcGCGccgUGGCCUccgcGCGcGCCg -3'
miRNA:   3'- -GCaGAGCCGC-CGC---AUCGGGa---CGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 59270 0.66 0.695907
Target:  5'- gCGUCgcaCGGCGuGuCGccGCCCaGCAGCg -3'
miRNA:   3'- -GCAGa--GCCGC-C-GCauCGGGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 37872 0.66 0.695907
Target:  5'- aCGcCU-GGCGGCGcgugcuggAGCCCgaGCuGGCCa -3'
miRNA:   3'- -GCaGAgCCGCCGCa-------UCGGGa-CG-UCGG- -5'
23588 3' -60.8 NC_005261.1 + 28178 0.66 0.686094
Target:  5'- cCGUCUCGcuGCGcGcCGaAGCCg-GCGGCCu -3'
miRNA:   3'- -GCAGAGC--CGC-C-GCaUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 35908 0.66 0.686094
Target:  5'- cCGcCgCGGCaGCGcGGCCCcgcgccGCAGCCc -3'
miRNA:   3'- -GCaGaGCCGcCGCaUCGGGa-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 97142 0.66 0.695907
Target:  5'- aCG-CUCGGaGGCGcUGGCgCCgGCccGGCCg -3'
miRNA:   3'- -GCaGAGCCgCCGC-AUCG-GGaCG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 128791 0.66 0.695907
Target:  5'- uGUCUgGGCgcccgggcccgcGGCGgGGCUcgcgCUGCGGCUg -3'
miRNA:   3'- gCAGAgCCG------------CCGCaUCGG----GACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 136758 0.66 0.676239
Target:  5'- ---gUCGGUGGUGaggAGCUCgUGCAGCg -3'
miRNA:   3'- gcagAGCCGCCGCa--UCGGG-ACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 49176 0.66 0.666349
Target:  5'- ----aCGGCGGgGUgcucggccaGGCCCU-CGGCCg -3'
miRNA:   3'- gcagaGCCGCCgCA---------UCGGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 66300 0.66 0.656434
Target:  5'- gCGUCagGcGCGGCacggccaccgagGcGGCCgUGCAGCCc -3'
miRNA:   3'- -GCAGagC-CGCCG------------CaUCGGgACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 118633 0.66 0.676239
Target:  5'- cCGcCgCGGCGGCGcucugGGCCCcG-GGCCg -3'
miRNA:   3'- -GCaGaGCCGCCGCa----UCGGGaCgUCGG- -5'
23588 3' -60.8 NC_005261.1 + 121390 0.66 0.656434
Target:  5'- gCGg--CGGCGGCGccuGCCCgagugcgacgGCuGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCau-CGGGa---------CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 84286 0.66 0.656434
Target:  5'- cCG-C-CGGCGGCcccGGCCCcgGCGGCg -3'
miRNA:   3'- -GCaGaGCCGCCGca-UCGGGa-CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 4580 0.66 0.676239
Target:  5'- gGUC-CGGCGG-GgcGCCCcccgGC-GCCa -3'
miRNA:   3'- gCAGaGCCGCCgCauCGGGa---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 18336 0.66 0.70567
Target:  5'- gCGUCgCGGCgccaGGUGUAcacGCCCU-CGGCUg -3'
miRNA:   3'- -GCAGaGCCG----CCGCAU---CGGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 95554 0.67 0.6465
Target:  5'- gCGgcugC-CGGCGGCG--GCCCgGCcGCCg -3'
miRNA:   3'- -GCa---GaGCCGCCGCauCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 108809 0.67 0.6465
Target:  5'- ----aCGGCcGCG-GGCCCcGCGGCCg -3'
miRNA:   3'- gcagaGCCGcCGCaUCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 31878 0.67 0.60673
Target:  5'- gCGUCagcgCGGCGGCGggGGCggaCgcgGCGGCg -3'
miRNA:   3'- -GCAGa---GCCGCCGCa-UCGg--Ga--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 14975 0.67 0.60673
Target:  5'- uCGUCacgGGCgaugGGCGgGGCCCgcgccuggGCGGCCg -3'
miRNA:   3'- -GCAGag-CCG----CCGCaUCGGGa-------CGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.