miRNA display CGI


Results 81 - 100 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 86645 0.67 0.613681
Target:  5'- gCGUCaggaggagcaCGGCGGCGaGGCagaagacgguuaugCCUGCGGCg -3'
miRNA:   3'- -GCAGa---------GCCGCCGCaUCG--------------GGACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 31878 0.67 0.60673
Target:  5'- gCGUCagcgCGGCGGCGggGGCggaCgcgGCGGCg -3'
miRNA:   3'- -GCAGa---GCCGCCGCa-UCGg--Ga--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 14975 0.67 0.60673
Target:  5'- uCGUCacgGGCgaugGGCGgGGCCCgcgccuggGCGGCCg -3'
miRNA:   3'- -GCAGag-CCG----CCGCaUCGGGa-------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 108517 0.67 0.596815
Target:  5'- aGUCguagCGGCGGCucaUGGCCaCgcagGCcGCCa -3'
miRNA:   3'- gCAGa---GCCGCCGc--AUCGG-Ga---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 34251 0.67 0.596815
Target:  5'- gCGg--CGGCGGCG-AGCgCUuccgugugGCGGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCaUCGgGA--------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 128013 0.67 0.596815
Target:  5'- cCGcCUgGGCaGGCGcgGGCCCUgggagcacGCGGUCg -3'
miRNA:   3'- -GCaGAgCCG-CCGCa-UCGGGA--------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 109956 0.67 0.616663
Target:  5'- gCGgccgCGGCGGCGgcaacagcGCCCccccgaGCAGCCc -3'
miRNA:   3'- -GCaga-GCCGCCGCau------CGGGa-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 443 0.67 0.616663
Target:  5'- cCGgcgCg-GGCGGCGgGGCCCggggGCGcGCCc -3'
miRNA:   3'- -GCa--GagCCGCCGCaUCGGGa---CGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 93918 0.67 0.636555
Target:  5'- cCGUCUgCGGCGcccGCGggcagcGGCCCUGgcccGCCg -3'
miRNA:   3'- -GCAGA-GCCGC---CGCa-----UCGGGACgu--CGG- -5'
23588 3' -60.8 NC_005261.1 + 35672 0.67 0.636555
Target:  5'- aCGgcgaGGCGGUGUccgccgGGCgCCUGgGGCCg -3'
miRNA:   3'- -GCagagCCGCCGCA------UCG-GGACgUCGG- -5'
23588 3' -60.8 NC_005261.1 + 78646 0.67 0.636555
Target:  5'- gGUggUGGCGGCGcGGCacccgCUGCGGCg -3'
miRNA:   3'- gCAgaGCCGCCGCaUCGg----GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 54370 0.67 0.636555
Target:  5'- gCGUC-CGGCccGGCccAGCCCaGCggGGCCg -3'
miRNA:   3'- -GCAGaGCCG--CCGcaUCGGGaCG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 32233 0.67 0.636555
Target:  5'- uCGUUUCuGCGGC-UGGCCUUcGCGGgCg -3'
miRNA:   3'- -GCAGAGcCGCCGcAUCGGGA-CGUCgG- -5'
23588 3' -60.8 NC_005261.1 + 83073 0.67 0.633571
Target:  5'- cCG-C-CGGCGGCGgcGCUCgcgcgcgcacaucuUGCGGCUa -3'
miRNA:   3'- -GCaGaGCCGCCGCauCGGG--------------ACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 136905 0.67 0.626607
Target:  5'- gCGgcgCGGCGGCGUcccggAGCgCgUGCcGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCA-----UCG-GgACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 104371 0.67 0.626607
Target:  5'- -----gGGCGGCGgggGGCCCUccCGGCCc -3'
miRNA:   3'- gcagagCCGCCGCa--UCGGGAc-GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 44156 0.67 0.626607
Target:  5'- gCGUUccCGGCGGCGgcGGUUCUGCucccggcGCCg -3'
miRNA:   3'- -GCAGa-GCCGCCGCa-UCGGGACGu------CGG- -5'
23588 3' -60.8 NC_005261.1 + 39120 0.67 0.626607
Target:  5'- -cUCUCGGCGcugaucGCGagcaAGCCgCUGCGcGCCg -3'
miRNA:   3'- gcAGAGCCGC------CGCa---UCGG-GACGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 33052 0.67 0.623623
Target:  5'- uGcCgCGGCGGCGgcgGGCCCcGUggacgccgcccucgAGCCg -3'
miRNA:   3'- gCaGaGCCGCCGCa--UCGGGaCG--------------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 67217 0.67 0.636555
Target:  5'- aCGcCUuccUGcGCGGCGagcUGGCCUgGCGGCCg -3'
miRNA:   3'- -GCaGA---GC-CGCCGC---AUCGGGaCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.