miRNA display CGI


Results 101 - 120 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 78646 0.67 0.636555
Target:  5'- gGUggUGGCGGCGcGGCacccgCUGCGGCg -3'
miRNA:   3'- gCAgaGCCGCCGCaUCGg----GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 67217 0.67 0.636555
Target:  5'- aCGcCUuccUGcGCGGCGagcUGGCCUgGCGGCCg -3'
miRNA:   3'- -GCaGA---GC-CGCCGC---AUCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 93918 0.67 0.636555
Target:  5'- cCGUCUgCGGCGcccGCGggcagcGGCCCUGgcccGCCg -3'
miRNA:   3'- -GCAGA-GCCGC---CGCa-----UCGGGACgu--CGG- -5'
23588 3' -60.8 NC_005261.1 + 71924 0.67 0.636555
Target:  5'- cCGcCUCGGUGGcCGUGccGCgCCUGacgcacugcgaCAGCCg -3'
miRNA:   3'- -GCaGAGCCGCC-GCAU--CG-GGAC-----------GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 107352 0.67 0.6465
Target:  5'- aG-CUCgGGCGGCagGGCCg-GCGGCCc -3'
miRNA:   3'- gCaGAG-CCGCCGcaUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 67675 0.67 0.6465
Target:  5'- -cUCUUcGCGGC---GCCCUGCGGCg -3'
miRNA:   3'- gcAGAGcCGCCGcauCGGGACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 108809 0.67 0.6465
Target:  5'- ----aCGGCcGCG-GGCCCcGCGGCCg -3'
miRNA:   3'- gcagaGCCGcCGCaUCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 95554 0.67 0.6465
Target:  5'- gCGgcugC-CGGCGGCG--GCCCgGCcGCCg -3'
miRNA:   3'- -GCa---GaGCCGCCGCauCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 54370 0.67 0.636555
Target:  5'- gCGUC-CGGCccGGCccAGCCCaGCggGGCCg -3'
miRNA:   3'- -GCAGaGCCG--CCGcaUCGGGaCG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 83073 0.67 0.633571
Target:  5'- cCG-C-CGGCGGCGgcGCUCgcgcgcgcacaucuUGCGGCUa -3'
miRNA:   3'- -GCaGaGCCGCCGCauCGGG--------------ACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 136905 0.67 0.626607
Target:  5'- gCGgcgCGGCGGCGUcccggAGCgCgUGCcGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCA-----UCG-GgACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 2835 0.67 0.6465
Target:  5'- aG-CUCgGGCGGCagGGCCg-GCGGCCc -3'
miRNA:   3'- gCaGAG-CCGCCGcaUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 4292 0.67 0.6465
Target:  5'- ----aCGGCcGCG-GGCCCcGCGGCCg -3'
miRNA:   3'- gcagaGCCGcCGCaUCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 49297 0.67 0.6465
Target:  5'- aGcCcgCGGCGGUG-AGCgCCgcGCAGCCc -3'
miRNA:   3'- gCaGa-GCCGCCGCaUCG-GGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 103198 0.67 0.6465
Target:  5'- gGUCaCGcGCGGCGgcGCCucCUGCAGg- -3'
miRNA:   3'- gCAGaGC-CGCCGCauCGG--GACGUCgg -5'
23588 3' -60.8 NC_005261.1 + 125870 0.67 0.6465
Target:  5'- --aCUCGGCcggGGCGgcGCCCUugGCugaaggcgccugAGCCa -3'
miRNA:   3'- gcaGAGCCG---CCGCauCGGGA--CG------------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 83745 0.67 0.6465
Target:  5'- gCGUCgaggUGGCGGCGc-GCCa--CGGCCg -3'
miRNA:   3'- -GCAGa---GCCGCCGCauCGGgacGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 102579 0.67 0.6465
Target:  5'- cCGUCcgcgUCGGCGGCcucGCCC-GC-GCCu -3'
miRNA:   3'- -GCAG----AGCCGCCGcauCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 82096 0.67 0.626607
Target:  5'- --cCUCGGCccGCGccccccGCCCUGCGGCg -3'
miRNA:   3'- gcaGAGCCGc-CGCau----CGGGACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 32233 0.67 0.636555
Target:  5'- uCGUUUCuGCGGC-UGGCCUUcGCGGgCg -3'
miRNA:   3'- -GCAGAGcCGCCGcAUCGGGA-CGUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.