miRNA display CGI


Results 121 - 140 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 103198 0.67 0.6465
Target:  5'- gGUCaCGcGCGGCGgcGCCucCUGCAGg- -3'
miRNA:   3'- gCAGaGC-CGCCGCauCGG--GACGUCgg -5'
23588 3' -60.8 NC_005261.1 + 125870 0.67 0.6465
Target:  5'- --aCUCGGCcggGGCGgcGCCCUugGCugaaggcgccugAGCCa -3'
miRNA:   3'- gcaGAGCCG---CCGCauCGGGA--CG------------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 38687 0.67 0.626607
Target:  5'- aGUCUCGcGCuGGCcgGGCCCaagcCGGCCa -3'
miRNA:   3'- gCAGAGC-CG-CCGcaUCGGGac--GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 91005 0.67 0.62064
Target:  5'- uCGUCgccggCGGCaagaugcugaugaagGGCGUGGaCCUGguGCg -3'
miRNA:   3'- -GCAGa----GCCG---------------CCGCAUCgGGACguCGg -5'
23588 3' -60.8 NC_005261.1 + 63001 0.67 0.616663
Target:  5'- cCGgccCUCGGCGGCcgcGCCCgcgcggGC-GCCg -3'
miRNA:   3'- -GCa--GAGCCGCCGcauCGGGa-----CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 128013 0.67 0.596815
Target:  5'- cCGcCUgGGCaGGCGcgGGCCCUgggagcacGCGGUCg -3'
miRNA:   3'- -GCaGAgCCG-CCGCa-UCGGGA--------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 92159 0.67 0.596815
Target:  5'- uGUC-CGGCcacgaGGCGgcGCCCUucccGCuGCCc -3'
miRNA:   3'- gCAGaGCCG-----CCGCauCGGGA----CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 53845 0.67 0.596815
Target:  5'- uGgagCUCgaGGCGGCGgccgaggccgAGCCCgcggGCGGCg -3'
miRNA:   3'- gCa--GAG--CCGCCGCa---------UCGGGa---CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 44696 0.67 0.596815
Target:  5'- --aCUgGGCGGCGcgcgcgGGCuuCCUcGCGGCCa -3'
miRNA:   3'- gcaGAgCCGCCGCa-----UCG--GGA-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 20040 0.67 0.596815
Target:  5'- ----gCGGCaGGCGcggGGCCC-GCGGCCc -3'
miRNA:   3'- gcagaGCCG-CCGCa--UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 108517 0.67 0.596815
Target:  5'- aGUCguagCGGCGGCucaUGGCCaCgcagGCcGCCa -3'
miRNA:   3'- gCAGa---GCCGCCGc--AUCGG-Ga---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 121759 0.67 0.594835
Target:  5'- aGUCcgagcccgagcgCGGUGGgGUGGCC--GCGGCCg -3'
miRNA:   3'- gCAGa-----------GCCGCCgCAUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 3999 0.67 0.596815
Target:  5'- aGUCguagCGGCGGCucaUGGCCaCgcagGCcGCCa -3'
miRNA:   3'- gCAGa---GCCGCCGc--AUCGG-Ga---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 23496 0.67 0.596815
Target:  5'- cCGcCUgGGCaGGCGcgGGCCCUgggagcacGCGGUCg -3'
miRNA:   3'- -GCaGAgCCG-CCGCa-UCGGGA--------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 100697 0.67 0.596815
Target:  5'- gCGgccgCGGCGcGCGccGCCCgagccGCGGCCg -3'
miRNA:   3'- -GCaga-GCCGC-CGCauCGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 50486 0.67 0.596815
Target:  5'- gCGUCcgCGGCGGCccccAGCgCCUcGCccAGCCa -3'
miRNA:   3'- -GCAGa-GCCGCCGca--UCG-GGA-CG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 122330 0.67 0.60673
Target:  5'- gGUCa-GGUGGCGcucgcagAGCUCgccugGCGGCCg -3'
miRNA:   3'- gCAGagCCGCCGCa------UCGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 5439 0.67 0.616663
Target:  5'- gCGgccgCGGCGGCGgcaacagcGCCCccccgaGCAGCCc -3'
miRNA:   3'- -GCaga-GCCGCCGCau------CGGGa-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 33609 0.67 0.616663
Target:  5'- cCGgcgCg-GGCGGCGgGGCCCggggGCGcGCCc -3'
miRNA:   3'- -GCa--GagCCGCCGCaUCGGGa---CGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 83745 0.67 0.6465
Target:  5'- gCGUCgaggUGGCGGCGc-GCCa--CGGCCg -3'
miRNA:   3'- -GCAGa---GCCGCCGCauCGGgacGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.