miRNA display CGI


Results 141 - 160 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 105972 0.68 0.586924
Target:  5'- gCGcCUCGGCGuGCGgcuccAGCagcGCGGCCg -3'
miRNA:   3'- -GCaGAGCCGC-CGCa----UCGggaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 42493 0.68 0.586924
Target:  5'- gCGg--CGGCGGCGgcGCCgCUgagcGCGGCg -3'
miRNA:   3'- -GCagaGCCGCCGCauCGG-GA----CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 74739 0.68 0.557463
Target:  5'- cCGUCUCGGCGgaccuuGCGUAcuuccgcucGCCgUGCAaCCc -3'
miRNA:   3'- -GCAGAGCCGC------CGCAU---------CGGgACGUcGG- -5'
23588 3' -60.8 NC_005261.1 + 93313 0.68 0.586924
Target:  5'- --cCUCGGCGGCugGGCCCgGCgugGGUCc -3'
miRNA:   3'- gcaGAGCCGCCGcaUCGGGaCG---UCGG- -5'
23588 3' -60.8 NC_005261.1 + 121911 0.68 0.586924
Target:  5'- ----cCGGCGGCGagggggagGGCCCgGCcGCCg -3'
miRNA:   3'- gcagaGCCGCCGCa-------UCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 56172 0.68 0.586924
Target:  5'- cCGUCgaccCGGCGaCGUGGCCC-GC-GCUg -3'
miRNA:   3'- -GCAGa---GCCGCcGCAUCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 37529 0.68 0.586924
Target:  5'- gCGgCUCgGGCGGCGc-GCgCC-GCGGCCg -3'
miRNA:   3'- -GCaGAG-CCGCCGCauCG-GGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 103859 0.68 0.582976
Target:  5'- gCGUCUgCGcGCGGCGccgcgcggcgcccGGCCCcGuCGGCCg -3'
miRNA:   3'- -GCAGA-GC-CGCCGCa------------UCGGGaC-GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 33787 0.68 0.547732
Target:  5'- cCGcCggCGGCGGCGacgcgGGCCCgcucaagcugUGCGGCg -3'
miRNA:   3'- -GCaGa-GCCGCCGCa----UCGGG----------ACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 6433 0.68 0.553564
Target:  5'- cCGUCagGcGCGGCGggcgcggcgucggGGCCCaGCGGCg -3'
miRNA:   3'- -GCAGagC-CGCCGCa------------UCGGGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 108174 0.68 0.556487
Target:  5'- gCGUCUggagcgcaggccgCGGcCGGCaGgccgcGGCCCgcUGCAGCCg -3'
miRNA:   3'- -GCAGA-------------GCC-GCCG-Ca----UCGGG--ACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 20134 0.68 0.571166
Target:  5'- gCGUCUgcGCGGCGggccGCCagcagacgagcgcggCUGCGGCCg -3'
miRNA:   3'- -GCAGAgcCGCCGCau--CGG---------------GACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 116975 0.68 0.557463
Target:  5'- uCGUgCUCGuuGCGGCac-GCCCUGaaaAGCCg -3'
miRNA:   3'- -GCA-GAGC--CGCCGcauCGGGACg--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 31800 0.68 0.576081
Target:  5'- cCGaCUgGGCgGGCGUggaccgcGGCCCgcUGCAGCg -3'
miRNA:   3'- -GCaGAgCCG-CCGCA-------UCGGG--ACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 11148 0.68 0.577064
Target:  5'- cCGUCauugCGGCGGCGcGGCg--GCGGCa -3'
miRNA:   3'- -GCAGa---GCCGCCGCaUCGggaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 33930 0.68 0.577064
Target:  5'- gCGUCUUugagcgcgcgcgGGCcuGCGaGGCCCgcGCAGCCg -3'
miRNA:   3'- -GCAGAG------------CCGc-CGCaUCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 74423 0.68 0.577064
Target:  5'- ---gUCGGCGGCGUcgGGUUCacgcucacGCAGCCg -3'
miRNA:   3'- gcagAGCCGCCGCA--UCGGGa-------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 90647 0.68 0.577064
Target:  5'- --cCUCGcGCGcGCGcGGCUCUGC-GCCa -3'
miRNA:   3'- gcaGAGC-CGC-CGCaUCGGGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 89188 0.68 0.547732
Target:  5'- cCGUgCUCGGCGGCugccugcgcGU-GCCC-GCcGCCg -3'
miRNA:   3'- -GCA-GAGCCGCCG---------CAuCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 33398 0.68 0.547732
Target:  5'- gGUC-CGcGUGGCGcGGCCCcGCGacGCCg -3'
miRNA:   3'- gCAGaGC-CGCCGCaUCGGGaCGU--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.