miRNA display CGI


Results 21 - 40 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 55585 0.75 0.2472
Target:  5'- aGUCcgCGGCGGCGUcGCCCaUGC-GCUc -3'
miRNA:   3'- gCAGa-GCCGCCGCAuCGGG-ACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 127378 0.75 0.241476
Target:  5'- uGUCguuggCGGCGGCGaggAGCCCgGC-GCCc -3'
miRNA:   3'- gCAGa----GCCGCCGCa--UCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 69659 0.75 0.223896
Target:  5'- cCGcCUCGGCGGCGacgcgcucaaagAGCCCgcGCAGCa -3'
miRNA:   3'- -GCaGAGCCGCCGCa-----------UCGGGa-CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 32738 0.75 0.235862
Target:  5'- uCGUCUCGGCGGgcuCGgGGCCC-GCGcGCCc -3'
miRNA:   3'- -GCAGAGCCGCC---GCaUCGGGaCGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 86974 0.74 0.281995
Target:  5'- aCGUC-CGGCGGCagcacggcgcccucGUGGCCCUcGUcgaaGGCCa -3'
miRNA:   3'- -GCAGaGCCGCCG--------------CAUCGGGA-CG----UCGG- -5'
23588 3' -60.8 NC_005261.1 + 71236 0.74 0.258987
Target:  5'- gCGgccCUCGGCGGCGcagccgAGCCCcGC-GCCg -3'
miRNA:   3'- -GCa--GAGCCGCCGCa-----UCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 63745 0.74 0.277521
Target:  5'- gGcCgCGGCGGCGUAggccGCCgUGUAGCCc -3'
miRNA:   3'- gCaGaGCCGCCGCAU----CGGgACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 4400 0.74 0.277521
Target:  5'- cCGgg-CGGCGGCGgcGCgCUGCcgGGCCa -3'
miRNA:   3'- -GCagaGCCGCCGCauCGgGACG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 137994 0.74 0.271228
Target:  5'- gCGgCUgCGGCGGCGgcugcggcGGCCC-GCAGCCc -3'
miRNA:   3'- -GCaGA-GCCGCCGCa-------UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 83563 0.74 0.26505
Target:  5'- --aCUCGGCgGGCGUGcccgcggcGCCC-GCGGCCg -3'
miRNA:   3'- gcaGAGCCG-CCGCAU--------CGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 108917 0.74 0.277521
Target:  5'- cCGgg-CGGCGGCGgcGCgCUGCcgGGCCa -3'
miRNA:   3'- -GCagaGCCGCCGCauCGgGACG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 79534 0.74 0.258987
Target:  5'- -cUCUCaGCGGCGc-GCCCUGaCGGCCc -3'
miRNA:   3'- gcAGAGcCGCCGCauCGGGAC-GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 323 0.74 0.271228
Target:  5'- gCGgCUgCGGCGGCGgcugcggcGGCCC-GCAGCCc -3'
miRNA:   3'- -GCaGA-GCCGCCGCa-------UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 35180 0.74 0.28393
Target:  5'- cCGUgC-CGGgacaGGCGcugGGCCCUGCGGCCc -3'
miRNA:   3'- -GCA-GaGCCg---CCGCa--UCGGGACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 86249 0.74 0.28393
Target:  5'- aGUCggCGGCGGCGccgcGGUCCaGCAGCg -3'
miRNA:   3'- gCAGa-GCCGCCGCa---UCGGGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 38362 0.74 0.26505
Target:  5'- gCGcCgagCGGCGGCGgcGCgCgGCGGCCg -3'
miRNA:   3'- -GCaGa--GCCGCCGCauCGgGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 104840 0.74 0.271228
Target:  5'- gCGgCUgCGGCGGCGgcugcggcGGCCC-GCAGCCc -3'
miRNA:   3'- -GCaGA-GCCGCCGCa-------UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 70856 0.74 0.271228
Target:  5'- gCGUCUucgCGGCGGUGgcGCugCCgGCGGCCu -3'
miRNA:   3'- -GCAGA---GCCGCCGCauCG--GGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 19807 0.74 0.271228
Target:  5'- gCGUCcgCGGCGGCGacAGCCagcGCGGCUg -3'
miRNA:   3'- -GCAGa-GCCGCCGCa-UCGGga-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 68549 0.73 0.324843
Target:  5'- uCGUCUgaCGGCGGCGUgaugccGGCCaccccCAGCCg -3'
miRNA:   3'- -GCAGA--GCCGCCGCA------UCGGgac--GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.