miRNA display CGI


Results 61 - 80 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 51774 0.72 0.369983
Target:  5'- gCG-CU-GGcCGGCGUcGCCCUGCuGGCCg -3'
miRNA:   3'- -GCaGAgCC-GCCGCAuCGGGACG-UCGG- -5'
23588 3' -60.8 NC_005261.1 + 88205 0.72 0.362169
Target:  5'- cCGUCgcgCGGCGGCugGgcGCCCgcgcgcugGCGGCg -3'
miRNA:   3'- -GCAGa--GCCGCCG--CauCGGGa-------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 43969 0.72 0.362169
Target:  5'- aGcCUC-GCGGCGccGCCCUGC-GCCg -3'
miRNA:   3'- gCaGAGcCGCCGCauCGGGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 108992 0.72 0.35447
Target:  5'- cCGUCgcgCGGCgccgcGGCGUAGCCUgcGCGGgCCc -3'
miRNA:   3'- -GCAGa--GCCG-----CCGCAUCGGGa-CGUC-GG- -5'
23588 3' -60.8 NC_005261.1 + 58228 0.72 0.362169
Target:  5'- gCGcCcgCGGCGGCGgGGUCCU-CGGCCa -3'
miRNA:   3'- -GCaGa-GCCGCCGCaUCGGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 107804 0.71 0.385953
Target:  5'- gGcCUCGcgcGCGGCG--GCCCUaGCGGCCg -3'
miRNA:   3'- gCaGAGC---CGCCGCauCGGGA-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 18526 0.71 0.385953
Target:  5'- gCGUCaaugaCGGCGGCGU--CCC-GCGGCCc -3'
miRNA:   3'- -GCAGa----GCCGCCGCAucGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 115484 0.71 0.419226
Target:  5'- gCGggCUCGGCcgcGGCGgcGCgCC-GCAGCCc -3'
miRNA:   3'- -GCa-GAGCCG---CCGCauCG-GGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 34718 0.71 0.385953
Target:  5'- aGcCUCaGCGGuCGgcGCCCccugGCGGCCg -3'
miRNA:   3'- gCaGAGcCGCC-GCauCGGGa---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 93723 0.71 0.389201
Target:  5'- uCGUCgUCGGCGGCGgcAGCgCgcgcuucguacucgGCGGCCc -3'
miRNA:   3'- -GCAG-AGCCGCCGCa-UCGgGa-------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 34358 0.71 0.419226
Target:  5'- cCGcC-CGGCGGCGccGCCCcGCcGCCg -3'
miRNA:   3'- -GCaGaGCCGCCGCauCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 4217 0.71 0.419226
Target:  5'- gCGg--CGGCGGCGUAGUUgagggUGUAGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCAUCGGg----ACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 37041 0.71 0.405708
Target:  5'- aGUCggcggCGGCGGCGUgggacggcgcgugggAGCUCUucGCGGCg -3'
miRNA:   3'- gCAGa----GCCGCCGCA---------------UCGGGA--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 31305 0.71 0.394107
Target:  5'- gCGUgUCGcUGGCG--GCCCUGCAGCg -3'
miRNA:   3'- -GCAgAGCcGCCGCauCGGGACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 7035 0.71 0.377911
Target:  5'- gCGcCggCGGCgaccgcgccgcgGGCGUAGCCgCUGCGGCa -3'
miRNA:   3'- -GCaGa-GCCG------------CCGCAUCGG-GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 18211 0.71 0.394107
Target:  5'- aGUaCUCGGCGGCGcGGCacaCggccgcGUAGCCg -3'
miRNA:   3'- gCA-GAGCCGCCGCaUCGg--Ga-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 9367 0.71 0.377911
Target:  5'- uCGUCgUCGGCagcgacgaGGCGgGGCaCCgugGCGGCCa -3'
miRNA:   3'- -GCAG-AGCCG--------CCGCaUCG-GGa--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 76149 0.71 0.419226
Target:  5'- gGUCgUGGCGGCGcacgacgccgUGGCgCUGCAGUa -3'
miRNA:   3'- gCAGaGCCGCCGC----------AUCGgGACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 12503 0.71 0.419226
Target:  5'- cCG-CUugCGGCGGCcccagccgAGCCCgcgGCGGCCg -3'
miRNA:   3'- -GCaGA--GCCGCCGca------UCGGGa--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 135077 0.71 0.377911
Target:  5'- -uUC-CGGCGGCGggcucgcGGCCCgGCGGCg -3'
miRNA:   3'- gcAGaGCCGCCGCa------UCGGGaCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.