miRNA display CGI


Results 81 - 100 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 9367 0.71 0.377911
Target:  5'- uCGUCgUCGGCagcgacgaGGCGgGGCaCCgugGCGGCCa -3'
miRNA:   3'- -GCAG-AGCCG--------CCGCaUCG-GGa--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 115108 0.71 0.394107
Target:  5'- gGcCUCGGCGGCGcuGCCCacgGC-GCCc -3'
miRNA:   3'- gCaGAGCCGCCGCauCGGGa--CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 46515 0.71 0.377911
Target:  5'- cCGcCgCGGCGaGCc-GGCCUUGCAGCCg -3'
miRNA:   3'- -GCaGaGCCGC-CGcaUCGGGACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 63591 0.71 0.402371
Target:  5'- -----aGaGCGGCGcggGGCCCUGUGGCCg -3'
miRNA:   3'- gcagagC-CGCCGCa--UCGGGACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 15217 0.7 0.451505
Target:  5'- aCG-CUCGcggacgccacggccGCGGCcguaGUGGCCCUGCaggaGGCCa -3'
miRNA:   3'- -GCaGAGC--------------CGCCG----CAUCGGGACG----UCGG- -5'
23588 3' -60.8 NC_005261.1 + 94854 0.7 0.463166
Target:  5'- gGcCUCGGCGcucGCGcacGGCCCgggcggGCGGCCc -3'
miRNA:   3'- gCaGAGCCGC---CGCa--UCGGGa-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 15172 0.7 0.463166
Target:  5'- gCGUagCGGCGGCGgcGCCCgcgggaaacGCcGCCa -3'
miRNA:   3'- -GCAgaGCCGCCGCauCGGGa--------CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 85733 0.7 0.454182
Target:  5'- aGUCaUgGGacaGGCGgcGUCgUGCAGCCg -3'
miRNA:   3'- gCAG-AgCCg--CCGCauCGGgACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 68710 0.7 0.463166
Target:  5'- ----aCGGCGGCGccGGCCCUcacGCGGCg -3'
miRNA:   3'- gcagaGCCGCCGCa-UCGGGA---CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 22801 0.7 0.463166
Target:  5'- uGUCgCGGcCGGCGgcGGCgCUGCcGCCg -3'
miRNA:   3'- gCAGaGCC-GCCGCa-UCGgGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 48798 0.7 0.427813
Target:  5'- ----aCGGCgGGCGcggggAGCCCgGCGGCCg -3'
miRNA:   3'- gcagaGCCG-CCGCa----UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 26605 0.7 0.436503
Target:  5'- gCGgg-CGGCGGCGgcacGGCgCC-GCAGCCc -3'
miRNA:   3'- -GCagaGCCGCCGCa---UCG-GGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 7871 0.7 0.445294
Target:  5'- ---gUCGGUGGCGUAGaggaCCcGCAGCg -3'
miRNA:   3'- gcagAGCCGCCGCAUCg---GGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 35710 0.7 0.463166
Target:  5'- cCGggggCUCGGUGGCG--GCCCcgGCcgaGGCCa -3'
miRNA:   3'- -GCa---GAGCCGCCGCauCGGGa-CG---UCGG- -5'
23588 3' -60.8 NC_005261.1 + 133936 0.7 0.454182
Target:  5'- ----gCGGCGGCcgcggGGCCC-GCGGCCg -3'
miRNA:   3'- gcagaGCCGCCGca---UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 37848 0.7 0.463166
Target:  5'- ----aCGGCGGCGUGGUggagGCGGCCu -3'
miRNA:   3'- gcagaGCCGCCGCAUCGgga-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 63934 0.7 0.463166
Target:  5'- gCGUCUgcugccCGGCGGCGaccGCCCcGCccGCCg -3'
miRNA:   3'- -GCAGA------GCCGCCGCau-CGGGaCGu-CGG- -5'
23588 3' -60.8 NC_005261.1 + 80274 0.7 0.463166
Target:  5'- gCGUCgcCGGCGuGCGcacacgGGCgCUGguGCCg -3'
miRNA:   3'- -GCAGa-GCCGC-CGCa-----UCGgGACguCGG- -5'
23588 3' -60.8 NC_005261.1 + 13998 0.7 0.472242
Target:  5'- uGcCcgCGGCGGCGguugGGCUgCUgGCAGCCa -3'
miRNA:   3'- gCaGa-GCCGCCGCa---UCGG-GA-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 34667 0.7 0.475898
Target:  5'- gCGgg-CGGCGGCGgcacggggccccugGGCCCgGgGGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCa-------------UCGGGaCgUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.