miRNA display CGI


Results 121 - 140 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 107122 0.69 0.490659
Target:  5'- cCGcCgUCGGCGGCGgGGCCgCcggGCGGCa -3'
miRNA:   3'- -GCaG-AGCCGCCGCaUCGG-Ga--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 54549 0.69 0.509401
Target:  5'- cCGcCUCGGCGGC---GCgCUGCGcGCCc -3'
miRNA:   3'- -GCaGAGCCGCCGcauCGgGACGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 128909 0.69 0.518885
Target:  5'- uCGUCggCGGCGGgGcGGUCCUGgGGgCu -3'
miRNA:   3'- -GCAGa-GCCGCCgCaUCGGGACgUCgG- -5'
23588 3' -60.8 NC_005261.1 + 55548 0.69 0.528438
Target:  5'- ----gCGGCGGUGgcGCCCgacgaGCGGCUc -3'
miRNA:   3'- gcagaGCCGCCGCauCGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 2605 0.69 0.490659
Target:  5'- cCGcCgUCGGCGGCGgGGCCgCcggGCGGCa -3'
miRNA:   3'- -GCaG-AGCCGCCGCaUCGG-Ga--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 70942 0.69 0.481408
Target:  5'- gCG-CgcgCGGCGGCGggggGGCUgCUGCuGGCCg -3'
miRNA:   3'- -GCaGa--GCCGCCGCa---UCGG-GACG-UCGG- -5'
23588 3' -60.8 NC_005261.1 + 47709 0.69 0.532277
Target:  5'- ---gUCGGCGGCGUcggGGgCCUccucggcggacaccaGCAGCCc -3'
miRNA:   3'- gcagAGCCGCCGCA---UCgGGA---------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 127675 0.69 0.528438
Target:  5'- gCGggaCGGCGGCGgccgcuGCCCcgGCGGCg -3'
miRNA:   3'- -GCagaGCCGCCGCau----CGGGa-CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 118515 0.69 0.528438
Target:  5'- cCG-CUCGGCGa-GgcGCCCUGCcccGCCg -3'
miRNA:   3'- -GCaGAGCCGCcgCauCGGGACGu--CGG- -5'
23588 3' -60.8 NC_005261.1 + 49023 0.69 0.528438
Target:  5'- -cUCUCaGCGGCGgcgGGCaCgCgcagGCAGCCg -3'
miRNA:   3'- gcAGAGcCGCCGCa--UCG-G-Ga---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 34934 0.69 0.528438
Target:  5'- gCGgggggCGGcCGGCGcgacccgGGCCCgGCGGCCu -3'
miRNA:   3'- -GCaga--GCC-GCCGCa------UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 127806 0.69 0.52748
Target:  5'- gCGcCgCGGCGGCG-GGCCgCUcgcgcucGCGGCCg -3'
miRNA:   3'- -GCaGaGCCGCCGCaUCGG-GA-------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 38909 0.69 0.524609
Target:  5'- -uUCUcCGGCGcGCG-GGCCCgcgcgccaagccgGCGGCCg -3'
miRNA:   3'- gcAGA-GCCGC-CGCaUCGGGa------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 60040 0.69 0.518885
Target:  5'- cCGUCggcgccgacggCGGCGGCGaagAGCg--GCGGCCg -3'
miRNA:   3'- -GCAGa----------GCCGCCGCa--UCGggaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 114343 0.69 0.518885
Target:  5'- uGgCUCGaGCGGCGcgUGGCC--GCGGCCg -3'
miRNA:   3'- gCaGAGC-CGCCGC--AUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 24392 0.69 0.518885
Target:  5'- uCGUCggCGGCGGgGcGGUCCUGgGGgCu -3'
miRNA:   3'- -GCAGa-GCCGCCgCaUCGGGACgUCgG- -5'
23588 3' -60.8 NC_005261.1 + 16300 0.69 0.517934
Target:  5'- cCGUCgggcccagCGGCGGCcgGGCCCUcccccucGCcGCCg -3'
miRNA:   3'- -GCAGa-------GCCGCCGcaUCGGGA-------CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 97757 0.69 0.509401
Target:  5'- gCGggCUCGGCGGCGcGGCCg-GCaucgacucccgAGCCc -3'
miRNA:   3'- -GCa-GAGCCGCCGCaUCGGgaCG-----------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 47882 0.69 0.509401
Target:  5'- nCGUCcggggagCGGCGGCGgcggcgcgaGGUCCUccaaccgcGCGGCCg -3'
miRNA:   3'- -GCAGa------GCCGCCGCa--------UCGGGA--------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 59498 0.69 0.507513
Target:  5'- gCGcCagCGGCGGCGgucgcacgcgcGCCCUggaGCAGCCc -3'
miRNA:   3'- -GCaGa-GCCGCCGCau---------CGGGA---CGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.