miRNA display CGI


Results 81 - 100 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 115484 0.71 0.419226
Target:  5'- gCGggCUCGGCcgcGGCGgcGCgCC-GCAGCCc -3'
miRNA:   3'- -GCa-GAGCCG---CCGCauCG-GGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 4217 0.71 0.419226
Target:  5'- gCGg--CGGCGGCGUAGUUgagggUGUAGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCAUCGGg----ACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 12503 0.71 0.419226
Target:  5'- cCG-CUugCGGCGGCcccagccgAGCCCgcgGCGGCCg -3'
miRNA:   3'- -GCaGA--GCCGCCGca------UCGGGa--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 34358 0.71 0.419226
Target:  5'- cCGcC-CGGCGGCGccGCCCcGCcGCCg -3'
miRNA:   3'- -GCaGaGCCGCCGCauCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 17161 0.7 0.427813
Target:  5'- cCGUCacccgCGGCgcgGGCGUgggcAGCCCUGCcGCg -3'
miRNA:   3'- -GCAGa----GCCG---CCGCA----UCGGGACGuCGg -5'
23588 3' -60.8 NC_005261.1 + 48798 0.7 0.427813
Target:  5'- ----aCGGCgGGCGcggggAGCCCgGCGGCCg -3'
miRNA:   3'- gcagaGCCG-CCGCa----UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 26605 0.7 0.436503
Target:  5'- gCGgg-CGGCGGCGgcacGGCgCC-GCAGCCc -3'
miRNA:   3'- -GCagaGCCGCCGCa---UCG-GGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 39393 0.7 0.436503
Target:  5'- gGcCcUGGCGGCGacccgAGCCCcaGCGGCCa -3'
miRNA:   3'- gCaGaGCCGCCGCa----UCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 118698 0.7 0.436503
Target:  5'- ----aCGcGCGGCGUGGUCCUGCucAGCg -3'
miRNA:   3'- gcagaGC-CGCCGCAUCGGGACG--UCGg -5'
23588 3' -60.8 NC_005261.1 + 128494 0.7 0.441765
Target:  5'- uCGUCguggagcucgacgCGGCGGCGgaggcAGCCUccugGCGGCUg -3'
miRNA:   3'- -GCAGa------------GCCGCCGCa----UCGGGa---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 134217 0.7 0.445294
Target:  5'- gGUCgcggCGGCcggcagcgucGGCGUGgcgcacgcGCCCUGCgcGGCCg -3'
miRNA:   3'- gCAGa---GCCG----------CCGCAU--------CGGGACG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 7871 0.7 0.445294
Target:  5'- ---gUCGGUGGCGUAGaggaCCcGCAGCg -3'
miRNA:   3'- gcagAGCCGCCGCAUCg---GGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 121833 0.7 0.445294
Target:  5'- cCGcCgCGGCGGCGcaccGGCgCCaGCAGCCc -3'
miRNA:   3'- -GCaGaGCCGCCGCa---UCG-GGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 29210 0.7 0.445294
Target:  5'- gCGcCaCGGCGGCGUucGGCCCggugaacgcGCAGCg -3'
miRNA:   3'- -GCaGaGCCGCCGCA--UCGGGa--------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 51118 0.7 0.44795
Target:  5'- aCGUCgCGGCcgcugugaucauucGGCGcgaaagcccccggGGCCCUGCGGCg -3'
miRNA:   3'- -GCAGaGCCG--------------CCGCa------------UCGGGACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 15217 0.7 0.451505
Target:  5'- aCG-CUCGcggacgccacggccGCGGCcguaGUGGCCCUGCaggaGGCCa -3'
miRNA:   3'- -GCaGAGC--------------CGCCG----CAUCGGGACG----UCGG- -5'
23588 3' -60.8 NC_005261.1 + 85733 0.7 0.454182
Target:  5'- aGUCaUgGGacaGGCGgcGUCgUGCAGCCg -3'
miRNA:   3'- gCAG-AgCCg--CCGCauCGGgACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 90910 0.7 0.454182
Target:  5'- gGUCUCGGCGGCGcucuuccGCCC-GCccaucaAGCUc -3'
miRNA:   3'- gCAGAGCCGCCGCau-----CGGGaCG------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 135028 0.7 0.454182
Target:  5'- gCGgccgCGGCGGCGaGGCcgacgCCUGCGGCg -3'
miRNA:   3'- -GCaga-GCCGCCGCaUCG-----GGACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 17563 0.7 0.454182
Target:  5'- cCG-UUCGGCGGU--GGCCUUGCGGgCg -3'
miRNA:   3'- -GCaGAGCCGCCGcaUCGGGACGUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.