miRNA display CGI


Results 101 - 120 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 17563 0.7 0.454182
Target:  5'- cCG-UUCGGCGGU--GGCCUUGCGGgCg -3'
miRNA:   3'- -GCaGAGCCGCCGcaUCGGGACGUCgG- -5'
23588 3' -60.8 NC_005261.1 + 130486 0.7 0.454182
Target:  5'- uGcCUCGGCGGCGagGGCCCcgacgacGUGGCg -3'
miRNA:   3'- gCaGAGCCGCCGCa-UCGGGa------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 90910 0.7 0.454182
Target:  5'- gGUCUCGGCGGCGcucuuccGCCC-GCccaucaAGCUc -3'
miRNA:   3'- gCAGAGCCGCCGCau-----CGGGaCG------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 21007 0.7 0.462264
Target:  5'- gCGcCUUGGgGGCGUgacaccgAGCCCUGgGGgCg -3'
miRNA:   3'- -GCaGAGCCgCCGCA-------UCGGGACgUCgG- -5'
23588 3' -60.8 NC_005261.1 + 35710 0.7 0.463166
Target:  5'- cCGggggCUCGGUGGCG--GCCCcgGCcgaGGCCa -3'
miRNA:   3'- -GCa---GAGCCGCCGCauCGGGa-CG---UCGG- -5'
23588 3' -60.8 NC_005261.1 + 15172 0.7 0.463166
Target:  5'- gCGUagCGGCGGCGgcGCCCgcgggaaacGCcGCCa -3'
miRNA:   3'- -GCAgaGCCGCCGCauCGGGa--------CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 37848 0.7 0.463166
Target:  5'- ----aCGGCGGCGUGGUggagGCGGCCu -3'
miRNA:   3'- gcagaGCCGCCGCAUCGgga-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 68710 0.7 0.463166
Target:  5'- ----aCGGCGGCGccGGCCCUcacGCGGCg -3'
miRNA:   3'- gcagaGCCGCCGCa-UCGGGA---CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 80274 0.7 0.463166
Target:  5'- gCGUCgcCGGCGuGCGcacacgGGCgCUGguGCCg -3'
miRNA:   3'- -GCAGa-GCCGC-CGCa-----UCGgGACguCGG- -5'
23588 3' -60.8 NC_005261.1 + 22801 0.7 0.463166
Target:  5'- uGUCgCGGcCGGCGgcGGCgCUGCcGCCg -3'
miRNA:   3'- gCAGaGCC-GCCGCa-UCGgGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 94854 0.7 0.463166
Target:  5'- gGcCUCGGCGcucGCGcacGGCCCgggcggGCGGCCc -3'
miRNA:   3'- gCaGAGCCGC---CGCa--UCGGGa-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 63934 0.7 0.463166
Target:  5'- gCGUCUgcugccCGGCGGCGaccGCCCcGCccGCCg -3'
miRNA:   3'- -GCAGA------GCCGCCGCau-CGGGaCGu-CGG- -5'
23588 3' -60.8 NC_005261.1 + 127318 0.7 0.463166
Target:  5'- uGUCgCGGcCGGCGgcGGCgCUGCcGCCg -3'
miRNA:   3'- gCAGaGCC-GCCGCa-UCGgGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 13998 0.7 0.472242
Target:  5'- uGcCcgCGGCGGCGguugGGCUgCUgGCAGCCa -3'
miRNA:   3'- gCaGa-GCCGCCGCa---UCGG-GA-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 34667 0.7 0.475898
Target:  5'- gCGgg-CGGCGGCGgcacggggccccugGGCCCgGgGGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCa-------------UCGGGaCgUCGG- -5'
23588 3' -60.8 NC_005261.1 + 13088 0.69 0.481408
Target:  5'- cCGUCggcgGGCGGCGggcucGGCUCgggggcgucgGCGGCCg -3'
miRNA:   3'- -GCAGag--CCGCCGCa----UCGGGa---------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 70942 0.69 0.481408
Target:  5'- gCG-CgcgCGGCGGCGggggGGCUgCUGCuGGCCg -3'
miRNA:   3'- -GCaGa--GCCGCCGCa---UCGG-GACG-UCGG- -5'
23588 3' -60.8 NC_005261.1 + 8098 0.69 0.481408
Target:  5'- gCG-CUCGGCGGaCGgcGCgCgGCGGCUc -3'
miRNA:   3'- -GCaGAGCCGCC-GCauCGgGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 118362 0.69 0.481408
Target:  5'- -cUCUCGGCcgggcgcuggGGCGcgcGGCCCgaggcgcugGCGGCCg -3'
miRNA:   3'- gcAGAGCCG----------CCGCa--UCGGGa--------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 65860 0.69 0.490659
Target:  5'- gGUCcgCGGCGGCuuGUacAGCCCcaGCGGCa -3'
miRNA:   3'- gCAGa-GCCGCCG--CA--UCGGGa-CGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.