miRNA display CGI


Results 121 - 140 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 107122 0.69 0.490659
Target:  5'- cCGcCgUCGGCGGCGgGGCCgCcggGCGGCa -3'
miRNA:   3'- -GCaG-AGCCGCCGCaUCGG-Ga--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 92524 0.69 0.490659
Target:  5'- gCGUCgCGgaaccccugcGCGGCGaggGGCCCguucaGCAGCCc -3'
miRNA:   3'- -GCAGaGC----------CGCCGCa--UCGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 70027 0.69 0.490659
Target:  5'- uGUCggccgcgcCGGCGGCGggggcgagggGGCCC-GCGGCg -3'
miRNA:   3'- gCAGa-------GCCGCCGCa---------UCGGGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 2605 0.69 0.490659
Target:  5'- cCGcCgUCGGCGGCGgGGCCgCcggGCGGCa -3'
miRNA:   3'- -GCaG-AGCCGCCGCaUCGG-Ga--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 64864 0.69 0.494382
Target:  5'- gCGUCgcgucccagaucagCGGCGGCGggagcgccgGGUCCaGCAGCg -3'
miRNA:   3'- -GCAGa-------------GCCGCCGCa--------UCGGGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 126057 0.69 0.499991
Target:  5'- gGUggCGGCGGCGcUGGCCUgugcggggcuUGgGGCCu -3'
miRNA:   3'- gCAgaGCCGCCGC-AUCGGG----------ACgUCGG- -5'
23588 3' -60.8 NC_005261.1 + 20047 0.69 0.499991
Target:  5'- cCGUC-CGGCGGUGUGa-CCUcCAGCCc -3'
miRNA:   3'- -GCAGaGCCGCCGCAUcgGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 51374 0.69 0.499991
Target:  5'- gCGcC-CGGCGGCGUugagcgccggcuGGCCUcggugaugGCGGCCg -3'
miRNA:   3'- -GCaGaGCCGCCGCA------------UCGGGa-------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 77137 0.69 0.499991
Target:  5'- gCGaUCUCGGCGGCcgagcuGCCCgugaGC-GCCg -3'
miRNA:   3'- -GC-AGAGCCGCCGcau---CGGGa---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 101452 0.69 0.500929
Target:  5'- aGUCUCGGCgcaacgcacgggccGGCGUgcaggggcgccagcuGGCCUggGUAGCUg -3'
miRNA:   3'- gCAGAGCCG--------------CCGCA---------------UCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 59498 0.69 0.507513
Target:  5'- gCGcCagCGGCGGCGgucgcacgcgcGCCCUggaGCAGCCc -3'
miRNA:   3'- -GCaGa-GCCGCCGCau---------CGGGA---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 47882 0.69 0.509401
Target:  5'- nCGUCcggggagCGGCGGCGgcggcgcgaGGUCCUccaaccgcGCGGCCg -3'
miRNA:   3'- -GCAGa------GCCGCCGCa--------UCGGGA--------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 54549 0.69 0.509401
Target:  5'- cCGcCUCGGCGGC---GCgCUGCGcGCCc -3'
miRNA:   3'- -GCaGAGCCGCCGcauCGgGACGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 21287 0.69 0.509401
Target:  5'- gCGUCUuguUGGCgcggaaGGCGUccagcAGCCCgcgGCGGCUg -3'
miRNA:   3'- -GCAGA---GCCG------CCGCA-----UCGGGa--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 31670 0.69 0.509401
Target:  5'- cCGgggC-CGGCGcGCGccGGCCCggacGCGGCCg -3'
miRNA:   3'- -GCa--GaGCCGC-CGCa-UCGGGa---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 97757 0.69 0.509401
Target:  5'- gCGggCUCGGCGGCGcGGCCg-GCaucgacucccgAGCCc -3'
miRNA:   3'- -GCa-GAGCCGCCGCaUCGGgaCG-----------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 16300 0.69 0.517934
Target:  5'- cCGUCgggcccagCGGCGGCcgGGCCCUcccccucGCcGCCg -3'
miRNA:   3'- -GCAGa-------GCCGCCGcaUCGGGA-------CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 114343 0.69 0.518885
Target:  5'- uGgCUCGaGCGGCGcgUGGCC--GCGGCCg -3'
miRNA:   3'- gCaGAGC-CGCCGC--AUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 128909 0.69 0.518885
Target:  5'- uCGUCggCGGCGGgGcGGUCCUGgGGgCu -3'
miRNA:   3'- -GCAGa-GCCGCCgCaUCGGGACgUCgG- -5'
23588 3' -60.8 NC_005261.1 + 24392 0.69 0.518885
Target:  5'- uCGUCggCGGCGGgGcGGUCCUGgGGgCu -3'
miRNA:   3'- -GCAGa-GCCGCCgCaUCGGGACgUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.