miRNA display CGI


Results 61 - 80 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 102470 0.66 0.670308
Target:  5'- uGUCUCGGCccgagccgccuucgcGGCuGgcuucGGCCCagGUGGCCu -3'
miRNA:   3'- gCAGAGCCG---------------CCG-Ca----UCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 113272 0.66 0.666349
Target:  5'- cCGUUcgaCGGCuacgagGGCGUGGUCCUcucGCuGCCg -3'
miRNA:   3'- -GCAGa--GCCG------CCGCAUCGGGA---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 49176 0.66 0.666349
Target:  5'- ----aCGGCGGgGUgcucggccaGGCCCU-CGGCCg -3'
miRNA:   3'- gcagaGCCGCCgCA---------UCGGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 47390 0.66 0.666349
Target:  5'- cCGUCggGGCGGCGccGCCCcccgUGCAcacGCg -3'
miRNA:   3'- -GCAGagCCGCCGCauCGGG----ACGU---CGg -5'
23588 3' -60.8 NC_005261.1 + 97715 0.66 0.666349
Target:  5'- ----aCGGCGG-GUGGCCCggGCGGgCu -3'
miRNA:   3'- gcagaGCCGCCgCAUCGGGa-CGUCgG- -5'
23588 3' -60.8 NC_005261.1 + 57593 0.66 0.666349
Target:  5'- gCGUCgaugugccaccUGGCGGCGcacgccgcgcAGCCCUccggguggcucaGCAGCCg -3'
miRNA:   3'- -GCAGa----------GCCGCCGCa---------UCGGGA------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 109344 0.66 0.666349
Target:  5'- gGUCggCGGCcGCGUcGCCgUcCAGCCg -3'
miRNA:   3'- gCAGa-GCCGcCGCAuCGGgAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 49374 0.66 0.656434
Target:  5'- uGUCcCGcGaGGCGcGGCCCagGUAGCCg -3'
miRNA:   3'- gCAGaGC-CgCCGCaUCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 125665 0.66 0.656434
Target:  5'- -cUCUCGGCcccGCGUuGCCCgGCgcggGGCCc -3'
miRNA:   3'- gcAGAGCCGc--CGCAuCGGGaCG----UCGG- -5'
23588 3' -60.8 NC_005261.1 + 66300 0.66 0.656434
Target:  5'- gCGUCagGcGCGGCacggccaccgagGcGGCCgUGCAGCCc -3'
miRNA:   3'- -GCAGagC-CGCCG------------CaUCGGgACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 53281 0.66 0.656434
Target:  5'- aCGcCUCGGCGGCcgccgaggaGGUgCUGCgcgaGGCCg -3'
miRNA:   3'- -GCaGAGCCGCCGca-------UCGgGACG----UCGG- -5'
23588 3' -60.8 NC_005261.1 + 50786 0.66 0.656434
Target:  5'- ----gCGGCGGCGgccGCCCcgGC-GCCg -3'
miRNA:   3'- gcagaGCCGCCGCau-CGGGa-CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 121390 0.66 0.656434
Target:  5'- gCGg--CGGCGGCGccuGCCCgagugcgacgGCuGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCau-CGGGa---------CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 118858 0.66 0.656434
Target:  5'- -----gGGCGGCGc-GCCC-GCGGCCc -3'
miRNA:   3'- gcagagCCGCCGCauCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 27463 0.66 0.656434
Target:  5'- aCGuUCUCGGCGcGUGU-GCggUGCAGCa -3'
miRNA:   3'- -GC-AGAGCCGC-CGCAuCGggACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 84286 0.66 0.656434
Target:  5'- cCG-C-CGGCGGCcccGGCCCcgGCGGCg -3'
miRNA:   3'- -GCaGaGCCGCCGca-UCGGGa-CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 95554 0.67 0.6465
Target:  5'- gCGgcugC-CGGCGGCG--GCCCgGCcGCCg -3'
miRNA:   3'- -GCa---GaGCCGCCGCauCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 67675 0.67 0.6465
Target:  5'- -cUCUUcGCGGC---GCCCUGCGGCg -3'
miRNA:   3'- gcAGAGcCGCCGcauCGGGACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 108809 0.67 0.6465
Target:  5'- ----aCGGCcGCG-GGCCCcGCGGCCg -3'
miRNA:   3'- gcagaGCCGcCGCaUCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 107352 0.67 0.6465
Target:  5'- aG-CUCgGGCGGCagGGCCg-GCGGCCc -3'
miRNA:   3'- gCaGAG-CCGCCGcaUCGGgaCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.