Results 81 - 100 of 338 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23588 | 3' | -60.8 | NC_005261.1 | + | 107352 | 0.67 | 0.6465 |
Target: 5'- aG-CUCgGGCGGCagGGCCg-GCGGCCc -3' miRNA: 3'- gCaGAG-CCGCCGcaUCGGgaCGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 49297 | 0.67 | 0.6465 |
Target: 5'- aGcCcgCGGCGGUG-AGCgCCgcGCAGCCc -3' miRNA: 3'- gCaGa-GCCGCCGCaUCG-GGa-CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 4292 | 0.67 | 0.6465 |
Target: 5'- ----aCGGCcGCG-GGCCCcGCGGCCg -3' miRNA: 3'- gcagaGCCGcCGCaUCGGGaCGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 102579 | 0.67 | 0.6465 |
Target: 5'- cCGUCcgcgUCGGCGGCcucGCCC-GC-GCCu -3' miRNA: 3'- -GCAG----AGCCGCCGcauCGGGaCGuCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 83745 | 0.67 | 0.6465 |
Target: 5'- gCGUCgaggUGGCGGCGc-GCCa--CGGCCg -3' miRNA: 3'- -GCAGa---GCCGCCGCauCGGgacGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 2835 | 0.67 | 0.6465 |
Target: 5'- aG-CUCgGGCGGCagGGCCg-GCGGCCc -3' miRNA: 3'- gCaGAG-CCGCCGcaUCGGgaCGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 103198 | 0.67 | 0.6465 |
Target: 5'- gGUCaCGcGCGGCGgcGCCucCUGCAGg- -3' miRNA: 3'- gCAGaGC-CGCCGCauCGG--GACGUCgg -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 54370 | 0.67 | 0.636555 |
Target: 5'- gCGUC-CGGCccGGCccAGCCCaGCggGGCCg -3' miRNA: 3'- -GCAGaGCCG--CCGcaUCGGGaCG--UCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 107714 | 0.67 | 0.636555 |
Target: 5'- aCGUCgcugccgCGGCaGGCGgcuGCgCCU-CGGCCg -3' miRNA: 3'- -GCAGa------GCCG-CCGCau-CG-GGAcGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 32233 | 0.67 | 0.636555 |
Target: 5'- uCGUUUCuGCGGC-UGGCCUUcGCGGgCg -3' miRNA: 3'- -GCAGAGcCGCCGcAUCGGGA-CGUCgG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 83373 | 0.67 | 0.636555 |
Target: 5'- aCGUCggcgagcgCGGCGaGCGcGGCCU--CGGCCg -3' miRNA: 3'- -GCAGa-------GCCGC-CGCaUCGGGacGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 101428 | 0.67 | 0.636555 |
Target: 5'- aCGUCggccgccgaGGCGGCGcGGUCCaGCgcuGGCCc -3' miRNA: 3'- -GCAGag-------CCGCCGCaUCGGGaCG---UCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 94034 | 0.67 | 0.636555 |
Target: 5'- -uUCUCGGCGGCccggcgcGCCCccccaGCGGCg -3' miRNA: 3'- gcAGAGCCGCCGcau----CGGGa----CGUCGg -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 71924 | 0.67 | 0.636555 |
Target: 5'- cCGcCUCGGUGGcCGUGccGCgCCUGacgcacugcgaCAGCCg -3' miRNA: 3'- -GCaGAGCCGCC-GCAU--CG-GGAC-----------GUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 93918 | 0.67 | 0.636555 |
Target: 5'- cCGUCUgCGGCGcccGCGggcagcGGCCCUGgcccGCCg -3' miRNA: 3'- -GCAGA-GCCGC---CGCa-----UCGGGACgu--CGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 67217 | 0.67 | 0.636555 |
Target: 5'- aCGcCUuccUGcGCGGCGagcUGGCCUgGCGGCCg -3' miRNA: 3'- -GCaGA---GC-CGCCGC---AUCGGGaCGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 35672 | 0.67 | 0.636555 |
Target: 5'- aCGgcgaGGCGGUGUccgccgGGCgCCUGgGGCCg -3' miRNA: 3'- -GCagagCCGCCGCA------UCG-GGACgUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 104093 | 0.67 | 0.636555 |
Target: 5'- --aCagGGCGGCGgcGCuCCgcgcgaccGCAGCCg -3' miRNA: 3'- gcaGagCCGCCGCauCG-GGa-------CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 78646 | 0.67 | 0.636555 |
Target: 5'- gGUggUGGCGGCGcGGCacccgCUGCGGCg -3' miRNA: 3'- gCAgaGCCGCCGCaUCGg----GACGUCGg -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 83073 | 0.67 | 0.633571 |
Target: 5'- cCG-C-CGGCGGCGgcGCUCgcgcgcgcacaucuUGCGGCUa -3' miRNA: 3'- -GCaGaGCCGCCGCauCGGG--------------ACGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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