miRNA display CGI


Results 101 - 120 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 66032 0.67 0.627602
Target:  5'- gCGUCguagUCGGCGGCcacggccagccccgGGCCC-GCGGUCc -3'
miRNA:   3'- -GCAG----AGCCGCCGca------------UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 38687 0.67 0.626607
Target:  5'- aGUCUCGcGCuGGCcgGGCCCaagcCGGCCa -3'
miRNA:   3'- gCAGAGC-CG-CCGcaUCGGGac--GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 44156 0.67 0.626607
Target:  5'- gCGUUccCGGCGGCGgcGGUUCUGCucccggcGCCg -3'
miRNA:   3'- -GCAGa-GCCGCCGCa-UCGGGACGu------CGG- -5'
23588 3' -60.8 NC_005261.1 + 39120 0.67 0.626607
Target:  5'- -cUCUCGGCGcugaucGCGagcaAGCCgCUGCGcGCCg -3'
miRNA:   3'- gcAGAGCCGC------CGCa---UCGG-GACGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 136905 0.67 0.626607
Target:  5'- gCGgcgCGGCGGCGUcccggAGCgCgUGCcGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCA-----UCG-GgACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 32388 0.67 0.626607
Target:  5'- gCGgcgCGGCGGCGUcccggAGCgCgUGCcGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCA-----UCG-GgACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 73362 0.67 0.626607
Target:  5'- cCGgCUCaGGCGGCGccAGCagcGCGGCCa -3'
miRNA:   3'- -GCaGAG-CCGCCGCa-UCGggaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 55193 0.67 0.626607
Target:  5'- ---aUCGGCgcacGGCGUAGCgCggauccgGCGGCCc -3'
miRNA:   3'- gcagAGCCG----CCGCAUCGgGa------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 82096 0.67 0.626607
Target:  5'- --cCUCGGCccGCGccccccGCCCUGCGGCg -3'
miRNA:   3'- gcaGAGCCGc-CGCau----CGGGACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 104371 0.67 0.626607
Target:  5'- -----gGGCGGCGgggGGCCCUccCGGCCc -3'
miRNA:   3'- gcagagCCGCCGCa--UCGGGAc-GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 33052 0.67 0.623623
Target:  5'- uGcCgCGGCGGCGgcgGGCCCcGUggacgccgcccucgAGCCg -3'
miRNA:   3'- gCaGaGCCGCCGCa--UCGGGaCG--------------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 52786 0.67 0.622628
Target:  5'- -uUCUCGGCgGGCGgcGCCaacaugucggagGCGGCg -3'
miRNA:   3'- gcAGAGCCG-CCGCauCGGga----------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 91005 0.67 0.62064
Target:  5'- uCGUCgccggCGGCaagaugcugaugaagGGCGUGGaCCUGguGCg -3'
miRNA:   3'- -GCAGa----GCCG---------------CCGCAUCgGGACguCGg -5'
23588 3' -60.8 NC_005261.1 + 47006 0.67 0.616663
Target:  5'- cCGggUCGGCgaucuuGGCGUGGgCCU-CGGCCa -3'
miRNA:   3'- -GCagAGCCG------CCGCAUCgGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 138126 0.67 0.616663
Target:  5'- cCGgcgCg-GGCGGCGgGGCCCggggGCGcGCCc -3'
miRNA:   3'- -GCa--GagCCGCCGCaUCGGGa---CGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 122433 0.67 0.616663
Target:  5'- gGUggCGGCgcuggccgcgcgGGCGgcGCCCgccaGCGGCCu -3'
miRNA:   3'- gCAgaGCCG------------CCGCauCGGGa---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 109956 0.67 0.616663
Target:  5'- gCGgccgCGGCGGCGgcaacagcGCCCccccgaGCAGCCc -3'
miRNA:   3'- -GCaga-GCCGCCGCau------CGGGa-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 7656 0.67 0.616663
Target:  5'- gGcCgcgCGGCGGCGcuuccGCCCgGCgGGCCg -3'
miRNA:   3'- gCaGa--GCCGCCGCau---CGGGaCG-UCGG- -5'
23588 3' -60.8 NC_005261.1 + 57986 0.67 0.616663
Target:  5'- gCG-CgCGGCGGCuucgucGUGGCCUUcCGGCCg -3'
miRNA:   3'- -GCaGaGCCGCCG------CAUCGGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 443 0.67 0.616663
Target:  5'- cCGgcgCg-GGCGGCGgGGCCCggggGCGcGCCc -3'
miRNA:   3'- -GCa--GagCCGCCGCaUCGGGa---CGU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.