miRNA display CGI


Results 41 - 60 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 15978 0.78 0.144618
Target:  5'- aCGg--CGGCGGCGcUGGCCCUGCugaugcgcgucggGGCCg -3'
miRNA:   3'- -GCagaGCCGCCGC-AUCGGGACG-------------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 16300 0.69 0.517934
Target:  5'- cCGUCgggcccagCGGCGGCcgGGCCCUcccccucGCcGCCg -3'
miRNA:   3'- -GCAGa-------GCCGCCGcaUCGGGA-------CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 16595 0.68 0.547732
Target:  5'- gCGcUCgcCGGCGGCGgccGCCgaGCGGCg -3'
miRNA:   3'- -GC-AGa-GCCGCCGCau-CGGgaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 17161 0.7 0.427813
Target:  5'- cCGUCacccgCGGCgcgGGCGUgggcAGCCCUGCcGCg -3'
miRNA:   3'- -GCAGa----GCCG---CCGCA----UCGGGACGuCGg -5'
23588 3' -60.8 NC_005261.1 + 17563 0.7 0.454182
Target:  5'- cCG-UUCGGCGGU--GGCCUUGCGGgCg -3'
miRNA:   3'- -GCaGAGCCGCCGcaUCGGGACGUCgG- -5'
23588 3' -60.8 NC_005261.1 + 18211 0.71 0.394107
Target:  5'- aGUaCUCGGCGGCGcGGCacaCggccgcGUAGCCg -3'
miRNA:   3'- gCA-GAGCCGCCGCaUCGg--Ga-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 18336 0.66 0.70567
Target:  5'- gCGUCgCGGCgccaGGUGUAcacGCCCU-CGGCUg -3'
miRNA:   3'- -GCAGaGCCG----CCGCAU---CGGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 18526 0.71 0.385953
Target:  5'- gCGUCaaugaCGGCGGCGU--CCC-GCGGCCc -3'
miRNA:   3'- -GCAGa----GCCGCCGCAucGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 18682 0.66 0.694928
Target:  5'- --aCUUGcggccccGCGGCGgGGCCUUGCucGGCCg -3'
miRNA:   3'- gcaGAGC-------CGCCGCaUCGGGACG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 19213 0.66 0.694928
Target:  5'- aCGUCcgcucauUCGuCGGCGcgGGCCCaGCAGgCCc -3'
miRNA:   3'- -GCAG-------AGCcGCCGCa-UCGGGaCGUC-GG- -5'
23588 3' -60.8 NC_005261.1 + 19807 0.74 0.271228
Target:  5'- gCGUCcgCGGCGGCGacAGCCagcGCGGCUg -3'
miRNA:   3'- -GCAGa-GCCGCCGCa-UCGGga-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 20040 0.67 0.596815
Target:  5'- ----gCGGCaGGCGcggGGCCC-GCGGCCc -3'
miRNA:   3'- gcagaGCCG-CCGCa--UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 20047 0.69 0.499991
Target:  5'- cCGUC-CGGCGGUGUGa-CCUcCAGCCc -3'
miRNA:   3'- -GCAGaGCCGCCGCAUcgGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 20134 0.68 0.571166
Target:  5'- gCGUCUgcGCGGCGggccGCCagcagacgagcgcggCUGCGGCCg -3'
miRNA:   3'- -GCAGAgcCGCCGCau--CGG---------------GACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 20248 0.66 0.70567
Target:  5'- cCGUCa-GGcCGGUGUGcgcGCCCaugGCAGCg -3'
miRNA:   3'- -GCAGagCC-GCCGCAU---CGGGa--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 20489 0.72 0.339423
Target:  5'- gCGUUgggGGCGGCGgcGCCagcgcGCGGCCg -3'
miRNA:   3'- -GCAGag-CCGCCGCauCGGga---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 21007 0.7 0.462264
Target:  5'- gCGcCUUGGgGGCGUgacaccgAGCCCUGgGGgCg -3'
miRNA:   3'- -GCaGAGCCgCCGCA-------UCGGGACgUCgG- -5'
23588 3' -60.8 NC_005261.1 + 21287 0.69 0.509401
Target:  5'- gCGUCUuguUGGCgcggaaGGCGUccagcAGCCCgcgGCGGCUg -3'
miRNA:   3'- -GCAGA---GCCG------CCGCA-----UCGGGa--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 22801 0.7 0.463166
Target:  5'- uGUCgCGGcCGGCGgcGGCgCUGCcGCCg -3'
miRNA:   3'- gCAGaGCC-GCCGCa-UCGgGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 22989 0.68 0.545792
Target:  5'- -----aGGCGGCGgaggaagaggggGGCCCggagGCGGCCc -3'
miRNA:   3'- gcagagCCGCCGCa-----------UCGGGa---CGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.