miRNA display CGI


Results 81 - 100 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 32233 0.67 0.636555
Target:  5'- uCGUUUCuGCGGC-UGGCCUUcGCGGgCg -3'
miRNA:   3'- -GCAGAGcCGCCGcAUCGGGA-CGUCgG- -5'
23588 3' -60.8 NC_005261.1 + 32388 0.67 0.626607
Target:  5'- gCGgcgCGGCGGCGUcccggAGCgCgUGCcGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCA-----UCG-GgACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 32738 0.75 0.235862
Target:  5'- uCGUCUCGGCGGgcuCGgGGCCC-GCGcGCCc -3'
miRNA:   3'- -GCAGAGCCGCC---GCaUCGGGaCGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 33052 0.67 0.623623
Target:  5'- uGcCgCGGCGGCGgcgGGCCCcGUggacgccgcccucgAGCCg -3'
miRNA:   3'- gCaGaGCCGCCGCa--UCGGGaCG--------------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 33398 0.68 0.547732
Target:  5'- gGUC-CGcGUGGCGcGGCCCcGCGacGCCg -3'
miRNA:   3'- gCAGaGC-CGCCGCaUCGGGaCGU--CGG- -5'
23588 3' -60.8 NC_005261.1 + 33532 0.66 0.70567
Target:  5'- cCGUCcagccgcucuUCGG-GGCgGUGGCCCagGCGcuGCCg -3'
miRNA:   3'- -GCAG----------AGCCgCCG-CAUCGGGa-CGU--CGG- -5'
23588 3' -60.8 NC_005261.1 + 33609 0.67 0.616663
Target:  5'- cCGgcgCg-GGCGGCGgGGCCCggggGCGcGCCc -3'
miRNA:   3'- -GCa--GagCCGCCGCaUCGGGa---CGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 33787 0.68 0.547732
Target:  5'- cCGcCggCGGCGGCGacgcgGGCCCgcucaagcugUGCGGCg -3'
miRNA:   3'- -GCaGa-GCCGCCGCa----UCGGG----------ACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 33930 0.68 0.577064
Target:  5'- gCGUCUUugagcgcgcgcgGGCcuGCGaGGCCCgcGCAGCCg -3'
miRNA:   3'- -GCAGAG------------CCGc-CGCaUCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 34251 0.67 0.596815
Target:  5'- gCGg--CGGCGGCG-AGCgCUuccgugugGCGGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCaUCGgGA--------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 34358 0.71 0.419226
Target:  5'- cCGcC-CGGCGGCGccGCCCcGCcGCCg -3'
miRNA:   3'- -GCaGaGCCGCCGCauCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 34667 0.7 0.475898
Target:  5'- gCGgg-CGGCGGCGgcacggggccccugGGCCCgGgGGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCa-------------UCGGGaCgUCGG- -5'
23588 3' -60.8 NC_005261.1 + 34718 0.71 0.385953
Target:  5'- aGcCUCaGCGGuCGgcGCCCccugGCGGCCg -3'
miRNA:   3'- gCaGAGcCGCC-GCauCGGGa---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 34934 0.69 0.528438
Target:  5'- gCGgggggCGGcCGGCGcgacccgGGCCCgGCGGCCu -3'
miRNA:   3'- -GCaga--GCC-GCCGCa------UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 35025 0.76 0.194808
Target:  5'- gCGUCUCGGUcgcuGGCGcgccGCCCUaacgGCGGCCg -3'
miRNA:   3'- -GCAGAGCCG----CCGCau--CGGGA----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 35180 0.74 0.28393
Target:  5'- cCGUgC-CGGgacaGGCGcugGGCCCUGCGGCCc -3'
miRNA:   3'- -GCA-GaGCCg---CCGCa--UCGGGACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 35255 0.79 0.124685
Target:  5'- uGUCgcgcgCGGCGGCGgAGCCCgcggcgcccGCGGCCg -3'
miRNA:   3'- gCAGa----GCCGCCGCaUCGGGa--------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 35550 0.66 0.70567
Target:  5'- aCGg--UGGCGGCGgcGgCa-GCAGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCauCgGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 35672 0.67 0.636555
Target:  5'- aCGgcgaGGCGGUGUccgccgGGCgCCUGgGGCCg -3'
miRNA:   3'- -GCagagCCGCCGCA------UCG-GGACgUCGG- -5'
23588 3' -60.8 NC_005261.1 + 35710 0.7 0.463166
Target:  5'- cCGggggCUCGGUGGCG--GCCCcgGCcgaGGCCa -3'
miRNA:   3'- -GCa---GAGCCGCCGCauCGGGa-CG---UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.