miRNA display CGI


Results 101 - 120 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 35908 0.66 0.686094
Target:  5'- cCGcCgCGGCaGCGcGGCCCcgcgccGCAGCCc -3'
miRNA:   3'- -GCaGaGCCGcCGCaUCGGGa-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 36808 0.66 0.695907
Target:  5'- cCGcCUCGGCGGCcgacGUcgugacgcaagcGGCgCUGCuGCUg -3'
miRNA:   3'- -GCaGAGCCGCCG----CA------------UCGgGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 37041 0.71 0.405708
Target:  5'- aGUCggcggCGGCGGCGUgggacggcgcgugggAGCUCUucGCGGCg -3'
miRNA:   3'- gCAGa----GCCGCCGCA---------------UCGGGA--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 37529 0.68 0.586924
Target:  5'- gCGgCUCgGGCGGCGc-GCgCC-GCGGCCg -3'
miRNA:   3'- -GCaGAG-CCGCCGCauCG-GGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 37848 0.7 0.463166
Target:  5'- ----aCGGCGGCGUGGUggagGCGGCCu -3'
miRNA:   3'- gcagaGCCGCCGCAUCGgga-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 37872 0.66 0.695907
Target:  5'- aCGcCU-GGCGGCGcgugcuggAGCCCgaGCuGGCCa -3'
miRNA:   3'- -GCaGAgCCGCCGCa-------UCGGGa-CG-UCGG- -5'
23588 3' -60.8 NC_005261.1 + 38362 0.74 0.26505
Target:  5'- gCGcCgagCGGCGGCGgcGCgCgGCGGCCg -3'
miRNA:   3'- -GCaGa--GCCGCCGCauCGgGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 38687 0.67 0.626607
Target:  5'- aGUCUCGcGCuGGCcgGGCCCaagcCGGCCa -3'
miRNA:   3'- gCAGAGC-CG-CCGcaUCGGGac--GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 38744 0.73 0.297098
Target:  5'- aGgacgCGGCGGCGcUGGCCgCaGCGGCCa -3'
miRNA:   3'- gCaga-GCCGCCGC-AUCGG-GaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 38909 0.69 0.524609
Target:  5'- -uUCUcCGGCGcGCG-GGCCCgcgcgccaagccgGCGGCCg -3'
miRNA:   3'- gcAGA-GCCGC-CGCaUCGGGa------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 39089 0.68 0.557463
Target:  5'- --cCUCGGaCGGCGgcacacGCCCcGCGGUCc -3'
miRNA:   3'- gcaGAGCC-GCCGCau----CGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 39120 0.67 0.626607
Target:  5'- -cUCUCGGCGcugaucGCGagcaAGCCgCUGCGcGCCg -3'
miRNA:   3'- gcAGAGCCGC------CGCa---UCGG-GACGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 39393 0.7 0.436503
Target:  5'- gGcCcUGGCGGCGacccgAGCCCcaGCGGCCa -3'
miRNA:   3'- gCaGaGCCGCCGCa----UCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 39920 0.66 0.676239
Target:  5'- gCG-CU-GGCGGCGgcGCCC-GCccccgaGGCCg -3'
miRNA:   3'- -GCaGAgCCGCCGCauCGGGaCG------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 41067 0.66 0.686094
Target:  5'- ----cCGGCGGCGcGGUCCgccGcCAGCCc -3'
miRNA:   3'- gcagaGCCGCCGCaUCGGGa--C-GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 42249 0.68 0.571166
Target:  5'- gCGcCUCgaacugcccgcgcgaGGCGGCcgcGCCCaGCAGCCg -3'
miRNA:   3'- -GCaGAG---------------CCGCCGcauCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 42493 0.68 0.586924
Target:  5'- gCGg--CGGCGGCGgcGCCgCUgagcGCGGCg -3'
miRNA:   3'- -GCagaGCCGCCGCauCGG-GA----CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 43969 0.72 0.362169
Target:  5'- aGcCUC-GCGGCGccGCCCUGC-GCCg -3'
miRNA:   3'- gCaGAGcCGCCGCauCGGGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 44156 0.67 0.626607
Target:  5'- gCGUUccCGGCGGCGgcGGUUCUGCucccggcGCCg -3'
miRNA:   3'- -GCAGa-GCCGCCGCa-UCGGGACGu------CGG- -5'
23588 3' -60.8 NC_005261.1 + 44395 0.79 0.118526
Target:  5'- uG-CUCGGCGGCGccGCCCgGCGGCUg -3'
miRNA:   3'- gCaGAGCCGCCGCauCGGGaCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.