miRNA display CGI


Results 121 - 140 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 44696 0.67 0.596815
Target:  5'- --aCUgGGCGGCGcgcgcgGGCuuCCUcGCGGCCa -3'
miRNA:   3'- gcaGAgCCGCCGCa-----UCG--GGA-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 46045 0.76 0.19014
Target:  5'- gCGcCagCGGCGGCGUcgGGCCCgGCGGCUc -3'
miRNA:   3'- -GCaGa-GCCGCCGCA--UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 46515 0.71 0.377911
Target:  5'- cCGcCgCGGCGaGCc-GGCCUUGCAGCCg -3'
miRNA:   3'- -GCaGaGCCGC-CGcaUCGGGACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 47006 0.67 0.616663
Target:  5'- cCGggUCGGCgaucuuGGCGUGGgCCU-CGGCCa -3'
miRNA:   3'- -GCagAGCCG------CCGCAUCgGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 47390 0.66 0.666349
Target:  5'- cCGUCggGGCGGCGccGCCCcccgUGCAcacGCg -3'
miRNA:   3'- -GCAGagCCGCCGCauCGGG----ACGU---CGg -5'
23588 3' -60.8 NC_005261.1 + 47709 0.69 0.532277
Target:  5'- ---gUCGGCGGCGUcggGGgCCUccucggcggacaccaGCAGCCc -3'
miRNA:   3'- gcagAGCCGCCGCA---UCgGGA---------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 47849 0.73 0.324127
Target:  5'- aCGUCgCGGCGuggccgaGCGUAGCCagcgGCAGCg -3'
miRNA:   3'- -GCAGaGCCGC-------CGCAUCGGga--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 47882 0.69 0.509401
Target:  5'- nCGUCcggggagCGGCGGCGgcggcgcgaGGUCCUccaaccgcGCGGCCg -3'
miRNA:   3'- -GCAGa------GCCGCCGCa--------UCGGGA--------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 48328 0.66 0.70567
Target:  5'- cCGggCUCGggggcgcgcGCGGCGaGGCCgaGgAGCCg -3'
miRNA:   3'- -GCa-GAGC---------CGCCGCaUCGGgaCgUCGG- -5'
23588 3' -60.8 NC_005261.1 + 48798 0.7 0.427813
Target:  5'- ----aCGGCgGGCGcggggAGCCCgGCGGCCg -3'
miRNA:   3'- gcagaGCCG-CCGCa----UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 49023 0.69 0.528438
Target:  5'- -cUCUCaGCGGCGgcgGGCaCgCgcagGCAGCCg -3'
miRNA:   3'- gcAGAGcCGCCGCa--UCG-G-Ga---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 49176 0.66 0.666349
Target:  5'- ----aCGGCGGgGUgcucggccaGGCCCU-CGGCCg -3'
miRNA:   3'- gcagaGCCGCCgCA---------UCGGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 49297 0.67 0.6465
Target:  5'- aGcCcgCGGCGGUG-AGCgCCgcGCAGCCc -3'
miRNA:   3'- gCaGa-GCCGCCGCaUCG-GGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 49374 0.66 0.656434
Target:  5'- uGUCcCGcGaGGCGcGGCCCagGUAGCCg -3'
miRNA:   3'- gCAGaGC-CgCCGCaUCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 49889 0.73 0.324843
Target:  5'- aCGcCgCGGCGGgGggcgccgccAGCCUUGCAGCCu -3'
miRNA:   3'- -GCaGaGCCGCCgCa--------UCGGGACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 50486 0.67 0.596815
Target:  5'- gCGUCcgCGGCGGCccccAGCgCCUcGCccAGCCa -3'
miRNA:   3'- -GCAGa-GCCGCCGca--UCG-GGA-CG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 50719 0.8 0.112652
Target:  5'- uCGUCUuccaCGGCGGCG-AGCgCCUGCGcGCCa -3'
miRNA:   3'- -GCAGA----GCCGCCGCaUCG-GGACGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 50786 0.66 0.656434
Target:  5'- ----gCGGCGGCGgccGCCCcgGC-GCCg -3'
miRNA:   3'- gcagaGCCGCCGCau-CGGGa-CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 51118 0.7 0.44795
Target:  5'- aCGUCgCGGCcgcugugaucauucGGCGcgaaagcccccggGGCCCUGCGGCg -3'
miRNA:   3'- -GCAGaGCCG--------------CCGCa------------UCGGGACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 51374 0.69 0.499991
Target:  5'- gCGcC-CGGCGGCGUugagcgccggcuGGCCUcggugaugGCGGCCg -3'
miRNA:   3'- -GCaGaGCCGCCGCA------------UCGGGa-------CGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.