miRNA display CGI


Results 21 - 40 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 127378 0.75 0.241476
Target:  5'- uGUCguuggCGGCGGCGaggAGCCCgGC-GCCc -3'
miRNA:   3'- gCAGa----GCCGCCGCa--UCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 127318 0.7 0.463166
Target:  5'- uGUCgCGGcCGGCGgcGGCgCUGCcGCCg -3'
miRNA:   3'- gCAGaGCC-GCCGCa-UCGgGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 127308 0.73 0.310735
Target:  5'- cCGgCU-GGCGGUGgGGCCCUGCcGCCc -3'
miRNA:   3'- -GCaGAgCCGCCGCaUCGGGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 126057 0.69 0.499991
Target:  5'- gGUggCGGCGGCGcUGGCCUgugcggggcuUGgGGCCu -3'
miRNA:   3'- gCAgaGCCGCCGC-AUCGGG----------ACgUCGG- -5'
23588 3' -60.8 NC_005261.1 + 125870 0.67 0.6465
Target:  5'- --aCUCGGCcggGGCGgcGCCCUugGCugaaggcgccugAGCCa -3'
miRNA:   3'- gcaGAGCCG---CCGCauCGGGA--CG------------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 125707 0.73 0.290456
Target:  5'- --aUUCGGCGGCGgcgcggGGCCCcgcGCGGUCg -3'
miRNA:   3'- gcaGAGCCGCCGCa-----UCGGGa--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 125665 0.66 0.656434
Target:  5'- -cUCUCGGCcccGCGUuGCCCgGCgcggGGCCc -3'
miRNA:   3'- gcAGAGCCGc--CGCAuCGGGaCG----UCGG- -5'
23588 3' -60.8 NC_005261.1 + 124201 0.73 0.317731
Target:  5'- gCGUC-CGGUGGCGUGaacugcguggcuGCCa-GCAGCCc -3'
miRNA:   3'- -GCAGaGCCGCCGCAU------------CGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 123686 0.66 0.70567
Target:  5'- aCGUCcCGGCGcucaGCGUGGgCCgcguacuCGGCCa -3'
miRNA:   3'- -GCAGaGCCGC----CGCAUCgGGac-----GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 122433 0.67 0.616663
Target:  5'- gGUggCGGCgcuggccgcgcgGGCGgcGCCCgccaGCGGCCu -3'
miRNA:   3'- gCAgaGCCG------------CCGCauCGGGa---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 122330 0.67 0.60673
Target:  5'- gGUCa-GGUGGCGcucgcagAGCUCgccugGCGGCCg -3'
miRNA:   3'- gCAGagCCGCCGCa------UCGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 122163 0.66 0.686094
Target:  5'- uCGUCUacacgcgcCGGCucGGCGcgGGCCC-GCuGCCc -3'
miRNA:   3'- -GCAGA--------GCCG--CCGCa-UCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 121911 0.68 0.586924
Target:  5'- ----cCGGCGGCGagggggagGGCCCgGCcGCCg -3'
miRNA:   3'- gcagaGCCGCCGCa-------UCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 121833 0.7 0.445294
Target:  5'- cCGcCgCGGCGGCGcaccGGCgCCaGCAGCCc -3'
miRNA:   3'- -GCaGaGCCGCCGCa---UCG-GGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 121759 0.67 0.594835
Target:  5'- aGUCcgagcccgagcgCGGUGGgGUGGCC--GCGGCCg -3'
miRNA:   3'- gCAGa-----------GCCGCCgCAUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 121390 0.66 0.656434
Target:  5'- gCGg--CGGCGGCGccuGCCCgagugcgacgGCuGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCau-CGGGa---------CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 121051 0.68 0.567242
Target:  5'- aCGUCgcgguuguggCGcGCGGUGUgcgcGGCgCCgGCGGCCg -3'
miRNA:   3'- -GCAGa---------GC-CGCCGCA----UCG-GGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 120577 0.68 0.538055
Target:  5'- cCGUCaUCGucaGCGuCGUGGCcgucgCCUGCGGCCu -3'
miRNA:   3'- -GCAG-AGC---CGCcGCAUCG-----GGACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 119228 0.68 0.586924
Target:  5'- uGcCggGGCGaGCGUGGCCgaucGCGGCCa -3'
miRNA:   3'- gCaGagCCGC-CGCAUCGGga--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 118858 0.66 0.656434
Target:  5'- -----gGGCGGCGc-GCCC-GCGGCCc -3'
miRNA:   3'- gcagagCCGCCGCauCGGGaCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.