miRNA display CGI


Results 61 - 80 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 109097 0.66 0.676239
Target:  5'- gGUC-CGGCGG-GgcGCCCcccgGC-GCCa -3'
miRNA:   3'- gCAGaGCCGCCgCauCGGGa---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 108992 0.72 0.35447
Target:  5'- cCGUCgcgCGGCgccgcGGCGUAGCCUgcGCGGgCCc -3'
miRNA:   3'- -GCAGa--GCCG-----CCGCAUCGGGa-CGUC-GG- -5'
23588 3' -60.8 NC_005261.1 + 108917 0.74 0.277521
Target:  5'- cCGgg-CGGCGGCGgcGCgCUGCcgGGCCa -3'
miRNA:   3'- -GCagaGCCGCCGCauCGgGACG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 108809 0.67 0.6465
Target:  5'- ----aCGGCcGCG-GGCCCcGCGGCCg -3'
miRNA:   3'- gcagaGCCGcCGCaUCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 108517 0.67 0.596815
Target:  5'- aGUCguagCGGCGGCucaUGGCCaCgcagGCcGCCa -3'
miRNA:   3'- gCAGa---GCCGCCGc--AUCGG-Ga---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 108174 0.68 0.556487
Target:  5'- gCGUCUggagcgcaggccgCGGcCGGCaGgccgcGGCCCgcUGCAGCCg -3'
miRNA:   3'- -GCAGA-------------GCC-GCCG-Ca----UCGGG--ACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 107804 0.71 0.385953
Target:  5'- gGcCUCGcgcGCGGCG--GCCCUaGCGGCCg -3'
miRNA:   3'- gCaGAGC---CGCCGCauCGGGA-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 107714 0.67 0.636555
Target:  5'- aCGUCgcugccgCGGCaGGCGgcuGCgCCU-CGGCCg -3'
miRNA:   3'- -GCAGa------GCCG-CCGCau-CG-GGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 107352 0.67 0.6465
Target:  5'- aG-CUCgGGCGGCagGGCCg-GCGGCCc -3'
miRNA:   3'- gCaGAG-CCGCCGcaUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 107177 1.12 0.000629
Target:  5'- cCGUCUCGGCGGCGUAGCCCUGCAGCCg -3'
miRNA:   3'- -GCAGAGCCGCCGCAUCGGGACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 107122 0.69 0.490659
Target:  5'- cCGcCgUCGGCGGCGgGGCCgCcggGCGGCa -3'
miRNA:   3'- -GCaG-AGCCGCCGCaUCGG-Ga--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 106858 0.66 0.686094
Target:  5'- cCGcCUgGGgGGCGggcGUCC-GCGGCCu -3'
miRNA:   3'- -GCaGAgCCgCCGCau-CGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 106556 0.68 0.567242
Target:  5'- gCGUCcgggcCGGCGcGCGccGGCCCcGgGGCCg -3'
miRNA:   3'- -GCAGa----GCCGC-CGCa-UCGGGaCgUCGG- -5'
23588 3' -60.8 NC_005261.1 + 105972 0.68 0.586924
Target:  5'- gCGcCUCGGCGuGCGgcuccAGCagcGCGGCCg -3'
miRNA:   3'- -GCaGAGCCGC-CGCa----UCGggaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 105158 0.68 0.557463
Target:  5'- gCGgCUCgagGGCGGCGUccacggGGCCCgccGCcGCCg -3'
miRNA:   3'- -GCaGAG---CCGCCGCA------UCGGGa--CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 104840 0.74 0.271228
Target:  5'- gCGgCUgCGGCGGCGgcugcggcGGCCC-GCAGCCc -3'
miRNA:   3'- -GCaGA-GCCGCCGCa-------UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 104769 0.66 0.676239
Target:  5'- cCGgCUgCGGCGGCGgcugcggGGCggCUGCGGCg -3'
miRNA:   3'- -GCaGA-GCCGCCGCa------UCGg-GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 104371 0.67 0.626607
Target:  5'- -----gGGCGGCGgggGGCCCUccCGGCCc -3'
miRNA:   3'- gcagagCCGCCGCa--UCGGGAc-GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 104274 0.77 0.176721
Target:  5'- gGUCUCGGCGGCugcgcgGGCCUcGCAGgCCc -3'
miRNA:   3'- gCAGAGCCGCCGca----UCGGGaCGUC-GG- -5'
23588 3' -60.8 NC_005261.1 + 104093 0.67 0.636555
Target:  5'- --aCagGGCGGCGgcGCuCCgcgcgaccGCAGCCg -3'
miRNA:   3'- gcaGagCCGCCGCauCG-GGa-------CGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.