miRNA display CGI


Results 81 - 100 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 103925 0.66 0.70567
Target:  5'- gGUCggGcGCGGCGUcuGCCagacgCUGCAGCg -3'
miRNA:   3'- gCAGagC-CGCCGCAu-CGG-----GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 103859 0.68 0.582976
Target:  5'- gCGUCUgCGcGCGGCGccgcgcggcgcccGGCCCcGuCGGCCg -3'
miRNA:   3'- -GCAGA-GC-CGCCGCa------------UCGGGaC-GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 103736 0.77 0.169914
Target:  5'- -uUCUUGGCGGCGgcGCCCuccgccugcgccucgUGCAGCa -3'
miRNA:   3'- gcAGAGCCGCCGCauCGGG---------------ACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 103502 0.68 0.577064
Target:  5'- uCGUCggcgccgCGGaCGGCGgcGUCCgcgGCAuccGCCg -3'
miRNA:   3'- -GCAGa------GCC-GCCGCauCGGGa--CGU---CGG- -5'
23588 3' -60.8 NC_005261.1 + 103198 0.67 0.6465
Target:  5'- gGUCaCGcGCGGCGgcGCCucCUGCAGg- -3'
miRNA:   3'- gCAGaGC-CGCCGCauCGG--GACGUCgg -5'
23588 3' -60.8 NC_005261.1 + 102579 0.67 0.6465
Target:  5'- cCGUCcgcgUCGGCGGCcucGCCC-GC-GCCu -3'
miRNA:   3'- -GCAG----AGCCGCCGcauCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 102470 0.66 0.670308
Target:  5'- uGUCUCGGCccgagccgccuucgcGGCuGgcuucGGCCCagGUGGCCu -3'
miRNA:   3'- gCAGAGCCG---------------CCG-Ca----UCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 101574 0.66 0.695907
Target:  5'- gCG-CUCGGCGcGCGccgUGGCCUccgcGCGcGCCg -3'
miRNA:   3'- -GCaGAGCCGC-CGC---AUCGGGa---CGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 101452 0.69 0.500929
Target:  5'- aGUCUCGGCgcaacgcacgggccGGCGUgcaggggcgccagcuGGCCUggGUAGCUg -3'
miRNA:   3'- gCAGAGCCG--------------CCGCA---------------UCGGGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 101428 0.67 0.636555
Target:  5'- aCGUCggccgccgaGGCGGCGcGGUCCaGCgcuGGCCc -3'
miRNA:   3'- -GCAGag-------CCGCCGCaUCGGGaCG---UCGG- -5'
23588 3' -60.8 NC_005261.1 + 101278 0.66 0.70567
Target:  5'- gCG-C-CGcGCGGCG-GGCCUUGC-GCCa -3'
miRNA:   3'- -GCaGaGC-CGCCGCaUCGGGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 100697 0.67 0.596815
Target:  5'- gCGgccgCGGCGcGCGccGCCCgagccGCGGCCg -3'
miRNA:   3'- -GCaga-GCCGC-CGCauCGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 100187 0.68 0.586924
Target:  5'- cCGUggCGGCGgggcaGCGUGGCggCCaGCAGCCc -3'
miRNA:   3'- -GCAgaGCCGC-----CGCAUCG--GGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 99599 0.77 0.168249
Target:  5'- cCGUCaccgUCGGCGGCG-GGCUCggccGCGGCCa -3'
miRNA:   3'- -GCAG----AGCCGCCGCaUCGGGa---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 99486 0.66 0.695907
Target:  5'- gGUC-CGGCucuGGCGcgggcccgGGCUCUGCGGgCg -3'
miRNA:   3'- gCAGaGCCG---CCGCa-------UCGGGACGUCgG- -5'
23588 3' -60.8 NC_005261.1 + 99471 0.8 0.104349
Target:  5'- ----gCGGCGGCGcUGGCCgCUGCGGCCa -3'
miRNA:   3'- gcagaGCCGCCGC-AUCGG-GACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 97757 0.69 0.509401
Target:  5'- gCGggCUCGGCGGCGcGGCCg-GCaucgacucccgAGCCc -3'
miRNA:   3'- -GCa-GAGCCGCCGCaUCGGgaCG-----------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 97715 0.66 0.666349
Target:  5'- ----aCGGCGG-GUGGCCCggGCGGgCu -3'
miRNA:   3'- gcagaGCCGCCgCAUCGGGa-CGUCgG- -5'
23588 3' -60.8 NC_005261.1 + 97220 0.66 0.695907
Target:  5'- aCG-CUCGGaGGCGcUGGCgCCgGCccGGCCg -3'
miRNA:   3'- -GCaGAGCCgCCGC-AUCG-GGaCG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 97142 0.66 0.695907
Target:  5'- aCG-CUCGGaGGCGcUGGCgCCgGCccGGCCg -3'
miRNA:   3'- -GCaGAGCCgCCGC-AUCG-GGaCG--UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.