miRNA display CGI


Results 101 - 120 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 95554 0.67 0.6465
Target:  5'- gCGgcugC-CGGCGGCG--GCCCgGCcGCCg -3'
miRNA:   3'- -GCa---GaGCCGCCGCauCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 94854 0.7 0.463166
Target:  5'- gGcCUCGGCGcucGCGcacGGCCCgggcggGCGGCCc -3'
miRNA:   3'- gCaGAGCCGC---CGCa--UCGGGa-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 94809 0.66 0.70567
Target:  5'- aGUCcccgcCGGCGGCGgaggccGCCCccgGC-GCCu -3'
miRNA:   3'- gCAGa----GCCGCCGCau----CGGGa--CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 94034 0.67 0.636555
Target:  5'- -uUCUCGGCGGCccggcgcGCCCccccaGCGGCg -3'
miRNA:   3'- gcAGAGCCGCCGcau----CGGGa----CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 93918 0.67 0.636555
Target:  5'- cCGUCUgCGGCGcccGCGggcagcGGCCCUGgcccGCCg -3'
miRNA:   3'- -GCAGA-GCCGC---CGCa-----UCGGGACgu--CGG- -5'
23588 3' -60.8 NC_005261.1 + 93836 0.66 0.695907
Target:  5'- cCGcCg-GGCGGCGccGCCgaGCAGUCc -3'
miRNA:   3'- -GCaGagCCGCCGCauCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 93723 0.71 0.389201
Target:  5'- uCGUCgUCGGCGGCGgcAGCgCgcgcuucguacucgGCGGCCc -3'
miRNA:   3'- -GCAG-AGCCGCCGCa-UCGgGa-------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 93670 0.66 0.686094
Target:  5'- gGUCcgcgggCGGCGGCGccggcggGGCgCCggcgGguGCCu -3'
miRNA:   3'- gCAGa-----GCCGCCGCa------UCG-GGa---CguCGG- -5'
23588 3' -60.8 NC_005261.1 + 93363 0.66 0.695907
Target:  5'- gCGgcgCUC-GCGGCGgcGCUCUuccucGCGGCUg -3'
miRNA:   3'- -GCa--GAGcCGCCGCauCGGGA-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 93313 0.68 0.586924
Target:  5'- --cCUCGGCGGCugGGCCCgGCgugGGUCc -3'
miRNA:   3'- gcaGAGCCGCCGcaUCGGGaCG---UCGG- -5'
23588 3' -60.8 NC_005261.1 + 93004 0.68 0.581004
Target:  5'- aCGUCUUGaaGGCGUacgcgagcgcccacaAGCCCgcgcacacGCGGCCc -3'
miRNA:   3'- -GCAGAGCcgCCGCA---------------UCGGGa-------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 92933 0.66 0.686094
Target:  5'- gGUCUCGG-GGCGguacaaGGCCagccgguacgGCAGCa -3'
miRNA:   3'- gCAGAGCCgCCGCa-----UCGGga--------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 92524 0.69 0.490659
Target:  5'- gCGUCgCGgaaccccugcGCGGCGaggGGCCCguucaGCAGCCc -3'
miRNA:   3'- -GCAGaGC----------CGCCGCa--UCGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 92168 0.66 0.706643
Target:  5'- gCG-CUCGGUGGagccgccgGGCCCgacgccgccgcuggcGCAGCCg -3'
miRNA:   3'- -GCaGAGCCGCCgca-----UCGGGa--------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 92159 0.67 0.596815
Target:  5'- uGUC-CGGCcacgaGGCGgcGCCCUucccGCuGCCc -3'
miRNA:   3'- gCAGaGCCG-----CCGCauCGGGA----CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 91119 0.68 0.557463
Target:  5'- cCGUCUCGcGCGccGCGgccgAGgCCU-CAGCCg -3'
miRNA:   3'- -GCAGAGC-CGC--CGCa---UCgGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 91005 0.67 0.62064
Target:  5'- uCGUCgccggCGGCaagaugcugaugaagGGCGUGGaCCUGguGCg -3'
miRNA:   3'- -GCAGa----GCCG---------------CCGCAUCgGGACguCGg -5'
23588 3' -60.8 NC_005261.1 + 90910 0.7 0.454182
Target:  5'- gGUCUCGGCGGCGcucuuccGCCC-GCccaucaAGCUc -3'
miRNA:   3'- gCAGAGCCGCCGCau-----CGGGaCG------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 90647 0.68 0.577064
Target:  5'- --cCUCGcGCGcGCGcGGCUCUGC-GCCa -3'
miRNA:   3'- gcaGAGC-CGC-CGCaUCGGGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 90613 0.68 0.582976
Target:  5'- --aCUCGGUguacggcuucaccGGCGUGgccaacggacugcuGCCCUGCcuGGCCg -3'
miRNA:   3'- gcaGAGCCG-------------CCGCAU--------------CGGGACG--UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.