Results 41 - 60 of 338 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23588 | 3' | -60.8 | NC_005261.1 | + | 80582 | 0.79 | 0.13448 |
Target: 5'- aGUCUCGGgGGCGU-GCUCggGCGGCUg -3' miRNA: 3'- gCAGAGCCgCCGCAuCGGGa-CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 87433 | 0.79 | 0.124685 |
Target: 5'- cCGUCaUGGCGGCGgcGCCgggGCGGCCg -3' miRNA: 3'- -GCAGaGCCGCCGCauCGGga-CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 35255 | 0.79 | 0.124685 |
Target: 5'- uGUCgcgcgCGGCGGCGgAGCCCgcggcgcccGCGGCCg -3' miRNA: 3'- gCAGa----GCCGCCGCaUCGGGa--------CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 44395 | 0.79 | 0.118526 |
Target: 5'- uG-CUCGGCGGCGccGCCCgGCGGCUg -3' miRNA: 3'- gCaGAGCCGCCGCauCGGGaCGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 50719 | 0.8 | 0.112652 |
Target: 5'- uCGUCUuccaCGGCGGCG-AGCgCCUGCGcGCCa -3' miRNA: 3'- -GCAGA----GCCGCCGCaUCG-GGACGU-CGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 32738 | 0.75 | 0.235862 |
Target: 5'- uCGUCUCGGCGGgcuCGgGGCCC-GCGcGCCc -3' miRNA: 3'- -GCAGAGCCGCC---GCaUCGGGaCGU-CGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 79534 | 0.74 | 0.258987 |
Target: 5'- -cUCUCaGCGGCGc-GCCCUGaCGGCCc -3' miRNA: 3'- gcAGAGcCGCCGCauCGGGAC-GUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 49889 | 0.73 | 0.324843 |
Target: 5'- aCGcCgCGGCGGgGggcgccgccAGCCUUGCAGCCu -3' miRNA: 3'- -GCaGaGCCGCCgCa--------UCGGGACGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 31975 | 0.73 | 0.324843 |
Target: 5'- gCGgcagCGGCGGCGgcGGCCCgguagggcgcgGCGGCCg -3' miRNA: 3'- -GCaga-GCCGCCGCa-UCGGGa----------CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 29690 | 0.73 | 0.312822 |
Target: 5'- gCGUgUCGGCGGCGcUGGCCUaccgagaccccuucgUGCgcggcguGGCCg -3' miRNA: 3'- -GCAgAGCCGCCGC-AUCGGG---------------ACG-------UCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 27910 | 0.73 | 0.310735 |
Target: 5'- gCGUCcgCGGCGGCGcGGUugCCguacucgGCGGCCa -3' miRNA: 3'- -GCAGa-GCCGCCGCaUCG--GGa------CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 38744 | 0.73 | 0.297098 |
Target: 5'- aGgacgCGGCGGCGcUGGCCgCaGCGGCCa -3' miRNA: 3'- gCaga-GCCGCCGC-AUCGG-GaCGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 125707 | 0.73 | 0.290456 |
Target: 5'- --aUUCGGCGGCGgcgcggGGCCCcgcGCGGUCg -3' miRNA: 3'- gcaGAGCCGCCGCa-----UCGGGa--CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 35180 | 0.74 | 0.28393 |
Target: 5'- cCGUgC-CGGgacaGGCGcugGGCCCUGCGGCCc -3' miRNA: 3'- -GCA-GaGCCg---CCGCa--UCGGGACGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 86249 | 0.74 | 0.28393 |
Target: 5'- aGUCggCGGCGGCGccgcGGUCCaGCAGCg -3' miRNA: 3'- gCAGa-GCCGCCGCa---UCGGGaCGUCGg -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 108917 | 0.74 | 0.277521 |
Target: 5'- cCGgg-CGGCGGCGgcGCgCUGCcgGGCCa -3' miRNA: 3'- -GCagaGCCGCCGCauCGgGACG--UCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 104840 | 0.74 | 0.271228 |
Target: 5'- gCGgCUgCGGCGGCGgcugcggcGGCCC-GCAGCCc -3' miRNA: 3'- -GCaGA-GCCGCCGCa-------UCGGGaCGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 70856 | 0.74 | 0.271228 |
Target: 5'- gCGUCUucgCGGCGGUGgcGCugCCgGCGGCCu -3' miRNA: 3'- -GCAGA---GCCGCCGCauCG--GGaCGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 19807 | 0.74 | 0.271228 |
Target: 5'- gCGUCcgCGGCGGCGacAGCCagcGCGGCUg -3' miRNA: 3'- -GCAGa-GCCGCCGCa-UCGGga-CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 38362 | 0.74 | 0.26505 |
Target: 5'- gCGcCgagCGGCGGCGgcGCgCgGCGGCCg -3' miRNA: 3'- -GCaGa--GCCGCCGCauCGgGaCGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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