miRNA display CGI


Results 81 - 100 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 31305 0.71 0.394107
Target:  5'- gCGUgUCGcUGGCG--GCCCUGCAGCg -3'
miRNA:   3'- -GCAgAGCcGCCGCauCGGGACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 37041 0.71 0.405708
Target:  5'- aGUCggcggCGGCGGCGUgggacggcgcgugggAGCUCUucGCGGCg -3'
miRNA:   3'- gCAGa----GCCGCCGCA---------------UCGGGA--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 4217 0.71 0.419226
Target:  5'- gCGg--CGGCGGCGUAGUUgagggUGUAGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCAUCGGg----ACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 12503 0.71 0.419226
Target:  5'- cCG-CUugCGGCGGCcccagccgAGCCCgcgGCGGCCg -3'
miRNA:   3'- -GCaGA--GCCGCCGca------UCGGGa--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 34358 0.71 0.419226
Target:  5'- cCGcC-CGGCGGCGccGCCCcGCcGCCg -3'
miRNA:   3'- -GCaGaGCCGCCGCauCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 48798 0.7 0.427813
Target:  5'- ----aCGGCgGGCGcggggAGCCCgGCGGCCg -3'
miRNA:   3'- gcagaGCCG-CCGCa----UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 26605 0.7 0.436503
Target:  5'- gCGgg-CGGCGGCGgcacGGCgCC-GCAGCCc -3'
miRNA:   3'- -GCagaGCCGCCGCa---UCG-GGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 9367 0.71 0.377911
Target:  5'- uCGUCgUCGGCagcgacgaGGCGgGGCaCCgugGCGGCCa -3'
miRNA:   3'- -GCAG-AGCCG--------CCGCaUCG-GGa--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 88205 0.72 0.362169
Target:  5'- cCGUCgcgCGGCGGCugGgcGCCCgcgcgcugGCGGCg -3'
miRNA:   3'- -GCAGa--GCCGCCG--CauCGGGa-------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 43969 0.72 0.362169
Target:  5'- aGcCUC-GCGGCGccGCCCUGC-GCCg -3'
miRNA:   3'- gCaGAGcCGCCGCauCGGGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 31975 0.73 0.324843
Target:  5'- gCGgcagCGGCGGCGgcGGCCCgguagggcgcgGCGGCCg -3'
miRNA:   3'- -GCaga-GCCGCCGCa-UCGGGa----------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 49889 0.73 0.324843
Target:  5'- aCGcCgCGGCGGgGggcgccgccAGCCUUGCAGCCu -3'
miRNA:   3'- -GCaGaGCCGCCgCa--------UCGGGACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 68549 0.73 0.324843
Target:  5'- uCGUCUgaCGGCGGCGUgaugccGGCCaccccCAGCCg -3'
miRNA:   3'- -GCAGA--GCCGCCGCA------UCGGgac--GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 109425 0.73 0.324843
Target:  5'- --cUUCGGCGGCGgcuGCCUccgccGCGGCCg -3'
miRNA:   3'- gcaGAGCCGCCGCau-CGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 77445 0.72 0.339423
Target:  5'- gGUCUCGGCGGUGcuGCgCgcgGCGGCg -3'
miRNA:   3'- gCAGAGCCGCCGCauCGgGa--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 20489 0.72 0.339423
Target:  5'- gCGUUgggGGCGGCGgcGCCagcgcGCGGCCg -3'
miRNA:   3'- -GCAGag-CCGCCGCauCGGga---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 109343 0.72 0.339423
Target:  5'- gCGUUgggcgcaGGCGGCGgcGUCCgcgccGCAGCCu -3'
miRNA:   3'- -GCAGag-----CCGCCGCauCGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 10715 0.72 0.35447
Target:  5'- cCGUCUCGcucGUGGCcgccgaGUAcGCCCggcagGCAGCCg -3'
miRNA:   3'- -GCAGAGC---CGCCG------CAU-CGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 108992 0.72 0.35447
Target:  5'- cCGUCgcgCGGCgccgcGGCGUAGCCUgcGCGGgCCc -3'
miRNA:   3'- -GCAGa--GCCG-----CCGCAUCGGGa-CGUC-GG- -5'
23588 3' -60.8 NC_005261.1 + 7871 0.7 0.445294
Target:  5'- ---gUCGGUGGCGUAGaggaCCcGCAGCg -3'
miRNA:   3'- gcagAGCCGCCGCAUCg---GGaCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.