Results 101 - 120 of 338 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23588 | 3' | -60.8 | NC_005261.1 | + | 127318 | 0.7 | 0.463166 |
Target: 5'- uGUCgCGGcCGGCGgcGGCgCUGCcGCCg -3' miRNA: 3'- gCAGaGCC-GCCGCa-UCGgGACGuCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 37848 | 0.7 | 0.463166 |
Target: 5'- ----aCGGCGGCGUGGUggagGCGGCCu -3' miRNA: 3'- gcagaGCCGCCGCAUCGgga-CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 63934 | 0.7 | 0.463166 |
Target: 5'- gCGUCUgcugccCGGCGGCGaccGCCCcGCccGCCg -3' miRNA: 3'- -GCAGA------GCCGCCGCau-CGGGaCGu-CGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 80274 | 0.7 | 0.463166 |
Target: 5'- gCGUCgcCGGCGuGCGcacacgGGCgCUGguGCCg -3' miRNA: 3'- -GCAGa-GCCGC-CGCa-----UCGgGACguCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 13998 | 0.7 | 0.472242 |
Target: 5'- uGcCcgCGGCGGCGguugGGCUgCUgGCAGCCa -3' miRNA: 3'- gCaGa-GCCGCCGCa---UCGG-GA-CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 12503 | 0.71 | 0.419226 |
Target: 5'- cCG-CUugCGGCGGCcccagccgAGCCCgcgGCGGCCg -3' miRNA: 3'- -GCaGA--GCCGCCGca------UCGGGa--CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 4217 | 0.71 | 0.419226 |
Target: 5'- gCGg--CGGCGGCGUAGUUgagggUGUAGCCg -3' miRNA: 3'- -GCagaGCCGCCGCAUCGGg----ACGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 77445 | 0.72 | 0.339423 |
Target: 5'- gGUCUCGGCGGUGcuGCgCgcgGCGGCg -3' miRNA: 3'- gCAGAGCCGCCGCauCGgGa--CGUCGg -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 20489 | 0.72 | 0.339423 |
Target: 5'- gCGUUgggGGCGGCGgcGCCagcgcGCGGCCg -3' miRNA: 3'- -GCAGag-CCGCCGCauCGGga---CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 109343 | 0.72 | 0.339423 |
Target: 5'- gCGUUgggcgcaGGCGGCGgcGUCCgcgccGCAGCCu -3' miRNA: 3'- -GCAGag-----CCGCCGCauCGGGa----CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 10715 | 0.72 | 0.35447 |
Target: 5'- cCGUCUCGcucGUGGCcgccgaGUAcGCCCggcagGCAGCCg -3' miRNA: 3'- -GCAGAGC---CGCCG------CAU-CGGGa----CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 108992 | 0.72 | 0.35447 |
Target: 5'- cCGUCgcgCGGCgccgcGGCGUAGCCUgcGCGGgCCc -3' miRNA: 3'- -GCAGa--GCCG-----CCGCAUCGGGa-CGUC-GG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 43969 | 0.72 | 0.362169 |
Target: 5'- aGcCUC-GCGGCGccGCCCUGC-GCCg -3' miRNA: 3'- gCaGAGcCGCCGCauCGGGACGuCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 88205 | 0.72 | 0.362169 |
Target: 5'- cCGUCgcgCGGCGGCugGgcGCCCgcgcgcugGCGGCg -3' miRNA: 3'- -GCAGa--GCCGCCG--CauCGGGa-------CGUCGg -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 9367 | 0.71 | 0.377911 |
Target: 5'- uCGUCgUCGGCagcgacgaGGCGgGGCaCCgugGCGGCCa -3' miRNA: 3'- -GCAG-AGCCG--------CCGCaUCG-GGa--CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 46515 | 0.71 | 0.377911 |
Target: 5'- cCGcCgCGGCGaGCc-GGCCUUGCAGCCg -3' miRNA: 3'- -GCaGaGCCGC-CGcaUCGGGACGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 7035 | 0.71 | 0.377911 |
Target: 5'- gCGcCggCGGCgaccgcgccgcgGGCGUAGCCgCUGCGGCa -3' miRNA: 3'- -GCaGa-GCCG------------CCGCAUCGG-GACGUCGg -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 18211 | 0.71 | 0.394107 |
Target: 5'- aGUaCUCGGCGGCGcGGCacaCggccgcGUAGCCg -3' miRNA: 3'- gCA-GAGCCGCCGCaUCGg--Ga-----CGUCGG- -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 31305 | 0.71 | 0.394107 |
Target: 5'- gCGUgUCGcUGGCG--GCCCUGCAGCg -3' miRNA: 3'- -GCAgAGCcGCCGCauCGGGACGUCGg -5' |
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23588 | 3' | -60.8 | NC_005261.1 | + | 37041 | 0.71 | 0.405708 |
Target: 5'- aGUCggcggCGGCGGCGUgggacggcgcgugggAGCUCUucGCGGCg -3' miRNA: 3'- gCAGa----GCCGCCGCA---------------UCGGGA--CGUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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