miRNA display CGI


Results 101 - 120 of 338 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 127318 0.7 0.463166
Target:  5'- uGUCgCGGcCGGCGgcGGCgCUGCcGCCg -3'
miRNA:   3'- gCAGaGCC-GCCGCa-UCGgGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 37848 0.7 0.463166
Target:  5'- ----aCGGCGGCGUGGUggagGCGGCCu -3'
miRNA:   3'- gcagaGCCGCCGCAUCGgga-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 63934 0.7 0.463166
Target:  5'- gCGUCUgcugccCGGCGGCGaccGCCCcGCccGCCg -3'
miRNA:   3'- -GCAGA------GCCGCCGCau-CGGGaCGu-CGG- -5'
23588 3' -60.8 NC_005261.1 + 80274 0.7 0.463166
Target:  5'- gCGUCgcCGGCGuGCGcacacgGGCgCUGguGCCg -3'
miRNA:   3'- -GCAGa-GCCGC-CGCa-----UCGgGACguCGG- -5'
23588 3' -60.8 NC_005261.1 + 13998 0.7 0.472242
Target:  5'- uGcCcgCGGCGGCGguugGGCUgCUgGCAGCCa -3'
miRNA:   3'- gCaGa-GCCGCCGCa---UCGG-GA-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 12503 0.71 0.419226
Target:  5'- cCG-CUugCGGCGGCcccagccgAGCCCgcgGCGGCCg -3'
miRNA:   3'- -GCaGA--GCCGCCGca------UCGGGa--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 4217 0.71 0.419226
Target:  5'- gCGg--CGGCGGCGUAGUUgagggUGUAGCCg -3'
miRNA:   3'- -GCagaGCCGCCGCAUCGGg----ACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 77445 0.72 0.339423
Target:  5'- gGUCUCGGCGGUGcuGCgCgcgGCGGCg -3'
miRNA:   3'- gCAGAGCCGCCGCauCGgGa--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 20489 0.72 0.339423
Target:  5'- gCGUUgggGGCGGCGgcGCCagcgcGCGGCCg -3'
miRNA:   3'- -GCAGag-CCGCCGCauCGGga---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 109343 0.72 0.339423
Target:  5'- gCGUUgggcgcaGGCGGCGgcGUCCgcgccGCAGCCu -3'
miRNA:   3'- -GCAGag-----CCGCCGCauCGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 10715 0.72 0.35447
Target:  5'- cCGUCUCGcucGUGGCcgccgaGUAcGCCCggcagGCAGCCg -3'
miRNA:   3'- -GCAGAGC---CGCCG------CAU-CGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 108992 0.72 0.35447
Target:  5'- cCGUCgcgCGGCgccgcGGCGUAGCCUgcGCGGgCCc -3'
miRNA:   3'- -GCAGa--GCCG-----CCGCAUCGGGa-CGUC-GG- -5'
23588 3' -60.8 NC_005261.1 + 43969 0.72 0.362169
Target:  5'- aGcCUC-GCGGCGccGCCCUGC-GCCg -3'
miRNA:   3'- gCaGAGcCGCCGCauCGGGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 88205 0.72 0.362169
Target:  5'- cCGUCgcgCGGCGGCugGgcGCCCgcgcgcugGCGGCg -3'
miRNA:   3'- -GCAGa--GCCGCCG--CauCGGGa-------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 9367 0.71 0.377911
Target:  5'- uCGUCgUCGGCagcgacgaGGCGgGGCaCCgugGCGGCCa -3'
miRNA:   3'- -GCAG-AGCCG--------CCGCaUCG-GGa--CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 46515 0.71 0.377911
Target:  5'- cCGcCgCGGCGaGCc-GGCCUUGCAGCCg -3'
miRNA:   3'- -GCaGaGCCGC-CGcaUCGGGACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 7035 0.71 0.377911
Target:  5'- gCGcCggCGGCgaccgcgccgcgGGCGUAGCCgCUGCGGCa -3'
miRNA:   3'- -GCaGa-GCCG------------CCGCAUCGG-GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 18211 0.71 0.394107
Target:  5'- aGUaCUCGGCGGCGcGGCacaCggccgcGUAGCCg -3'
miRNA:   3'- gCA-GAGCCGCCGCaUCGg--Ga-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 31305 0.71 0.394107
Target:  5'- gCGUgUCGcUGGCG--GCCCUGCAGCg -3'
miRNA:   3'- -GCAgAGCcGCCGCauCGGGACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 37041 0.71 0.405708
Target:  5'- aGUCggcggCGGCGGCGUgggacggcgcgugggAGCUCUucGCGGCg -3'
miRNA:   3'- gCAGa----GCCGCCGCA---------------UCGGGA--CGUCGg -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.