miRNA display CGI


Results 61 - 80 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 47390 0.66 0.666349
Target:  5'- cCGUCggGGCGGCGccGCCCcccgUGCAcacGCg -3'
miRNA:   3'- -GCAGagCCGCCGCauCGGG----ACGU---CGg -5'
23588 3' -60.8 NC_005261.1 + 50786 0.66 0.656434
Target:  5'- ----gCGGCGGCGgccGCCCcgGC-GCCg -3'
miRNA:   3'- gcagaGCCGCCGCau-CGGGa-CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 103925 0.66 0.70567
Target:  5'- gGUCggGcGCGGCGUcuGCCagacgCUGCAGCg -3'
miRNA:   3'- gCAGagC-CGCCGCAu-CGG-----GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 57506 0.66 0.702747
Target:  5'- aCGUCcCGGCGGCG-GGCCUucUuccacaggcacggcGCGGCg -3'
miRNA:   3'- -GCAGaGCCGCCGCaUCGGG--A--------------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 128791 0.66 0.695907
Target:  5'- uGUCUgGGCgcccgggcccgcGGCGgGGCUcgcgCUGCGGCUg -3'
miRNA:   3'- gCAGAgCCG------------CCGCaUCGG----GACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 97142 0.66 0.695907
Target:  5'- aCG-CUCGGaGGCGcUGGCgCCgGCccGGCCg -3'
miRNA:   3'- -GCaGAGCCgCCGC-AUCG-GGaCG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 41067 0.66 0.686094
Target:  5'- ----cCGGCGGCGcGGUCCgccGcCAGCCc -3'
miRNA:   3'- gcagaGCCGCCGCaUCGGGa--C-GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 136758 0.66 0.676239
Target:  5'- ---gUCGGUGGUGaggAGCUCgUGCAGCg -3'
miRNA:   3'- gcagAGCCGCCGCa--UCGGG-ACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 69657 0.66 0.676239
Target:  5'- uCGUCaacCGGCGGCuggggGUGGCCg-GCAucacGCCg -3'
miRNA:   3'- -GCAGa--GCCGCCG-----CAUCGGgaCGU----CGG- -5'
23588 3' -60.8 NC_005261.1 + 4580 0.66 0.676239
Target:  5'- gGUC-CGGCGG-GgcGCCCcccgGC-GCCa -3'
miRNA:   3'- gCAGaGCCGCCgCauCGGGa---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 127737 0.68 0.567242
Target:  5'- gCGggagCUUGGCGGCGggagcgGGCCgCgGCGGgCg -3'
miRNA:   3'- -GCa---GAGCCGCCGCa-----UCGG-GaCGUCgG- -5'
23588 3' -60.8 NC_005261.1 + 103502 0.68 0.577064
Target:  5'- uCGUCggcgccgCGGaCGGCGgcGUCCgcgGCAuccGCCg -3'
miRNA:   3'- -GCAGa------GCC-GCCGCauCGGGa--CGU---CGG- -5'
23588 3' -60.8 NC_005261.1 + 125870 0.67 0.6465
Target:  5'- --aCUCGGCcggGGCGgcGCCCUugGCugaaggcgccugAGCCa -3'
miRNA:   3'- gcaGAGCCG---CCGCauCGGGA--CG------------UCGG- -5'
23588 3' -60.8 NC_005261.1 + 4292 0.67 0.6465
Target:  5'- ----aCGGCcGCG-GGCCCcGCGGCCg -3'
miRNA:   3'- gcagaGCCGcCGCaUCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 94034 0.67 0.636555
Target:  5'- -uUCUCGGCGGCccggcgcGCCCccccaGCGGCg -3'
miRNA:   3'- gcAGAGCCGCCGcau----CGGGa----CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 73362 0.67 0.626607
Target:  5'- cCGgCUCaGGCGGCGccAGCagcGCGGCCa -3'
miRNA:   3'- -GCaGAG-CCGCCGCa-UCGggaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 63001 0.67 0.616663
Target:  5'- cCGgccCUCGGCGGCcgcGCCCgcgcggGC-GCCg -3'
miRNA:   3'- -GCa--GAGCCGCCGcauCGGGa-----CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 122330 0.67 0.60673
Target:  5'- gGUCa-GGUGGCGcucgcagAGCUCgccugGCGGCCg -3'
miRNA:   3'- gCAGagCCGCCGCa------UCGGGa----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 121759 0.67 0.594835
Target:  5'- aGUCcgagcccgagcgCGGUGGgGUGGCC--GCGGCCg -3'
miRNA:   3'- gCAGa-----------GCCGCCgCAUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 1455 0.68 0.586924
Target:  5'- gCGcCUCGGCGuGCGgcuccAGCagcGCGGCCg -3'
miRNA:   3'- -GCaGAGCCGC-CGCa----UCGggaCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.