miRNA display CGI


Results 81 - 100 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 49297 0.67 0.6465
Target:  5'- aGcCcgCGGCGGUG-AGCgCCgcGCAGCCc -3'
miRNA:   3'- gCaGa-GCCGCCGCaUCG-GGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 83373 0.67 0.636555
Target:  5'- aCGUCggcgagcgCGGCGaGCGcGGCCU--CGGCCg -3'
miRNA:   3'- -GCAGa-------GCCGC-CGCaUCGGGacGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 66032 0.67 0.627602
Target:  5'- gCGUCguagUCGGCGGCcacggccagccccgGGCCC-GCGGUCc -3'
miRNA:   3'- -GCAG----AGCCGCCGca------------UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 38687 0.67 0.626607
Target:  5'- aGUCUCGcGCuGGCcgGGCCCaagcCGGCCa -3'
miRNA:   3'- gCAGAGC-CG-CCGcaUCGGGac--GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 33609 0.67 0.616663
Target:  5'- cCGgcgCg-GGCGGCGgGGCCCggggGCGcGCCc -3'
miRNA:   3'- -GCa--GagCCGCCGCaUCGGGa---CGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 121759 0.67 0.594835
Target:  5'- aGUCcgagcccgagcgCGGUGGgGUGGCC--GCGGCCg -3'
miRNA:   3'- gCAGa-----------GCCGCCgCAUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 1455 0.68 0.586924
Target:  5'- gCGcCUCGGCGuGCGgcuccAGCagcGCGGCCg -3'
miRNA:   3'- -GCaGAGCCGC-CGCa----UCGggaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 4580 0.66 0.676239
Target:  5'- gGUC-CGGCGG-GgcGCCCcccgGC-GCCa -3'
miRNA:   3'- gCAGaGCCGCCgCauCGGGa---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 69657 0.66 0.676239
Target:  5'- uCGUCaacCGGCGGCuggggGUGGCCg-GCAucacGCCg -3'
miRNA:   3'- -GCAGa--GCCGCCG-----CAUCGGgaCGU----CGG- -5'
23588 3' -60.8 NC_005261.1 + 136758 0.66 0.676239
Target:  5'- ---gUCGGUGGUGaggAGCUCgUGCAGCg -3'
miRNA:   3'- gcagAGCCGCCGCa--UCGGG-ACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 91119 0.68 0.557463
Target:  5'- cCGUCUCGcGCGccGCGgccgAGgCCU-CAGCCg -3'
miRNA:   3'- -GCAGAGC-CGC--CGCa---UCgGGAcGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 58096 0.68 0.557463
Target:  5'- gCGUcCUCgGGCGGCaccAGCCgCgcgaGCAGCCu -3'
miRNA:   3'- -GCA-GAG-CCGCCGca-UCGG-Ga---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 118183 0.68 0.538055
Target:  5'- cCGUCUgGGCcGCG-GGCCCcGCGccuGCCg -3'
miRNA:   3'- -GCAGAgCCGcCGCaUCGGGaCGU---CGG- -5'
23588 3' -60.8 NC_005261.1 + 118515 0.69 0.528438
Target:  5'- cCG-CUCGGCGa-GgcGCCCUGCcccGCCg -3'
miRNA:   3'- -GCaGAGCCGCcgCauCGGGACGu--CGG- -5'
23588 3' -60.8 NC_005261.1 + 127806 0.69 0.52748
Target:  5'- gCGcCgCGGCGGCG-GGCCgCUcgcgcucGCGGCCg -3'
miRNA:   3'- -GCaGaGCCGCCGCaUCGG-GA-------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 103925 0.66 0.70567
Target:  5'- gGUCggGcGCGGCGUcuGCCagacgCUGCAGCg -3'
miRNA:   3'- gCAGagC-CGCCGCAu-CGG-----GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 57506 0.66 0.702747
Target:  5'- aCGUCcCGGCGGCG-GGCCUucUuccacaggcacggcGCGGCg -3'
miRNA:   3'- -GCAGaGCCGCCGCaUCGGG--A--------------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 128791 0.66 0.695907
Target:  5'- uGUCUgGGCgcccgggcccgcGGCGgGGCUcgcgCUGCGGCUg -3'
miRNA:   3'- gCAGAgCCG------------CCGCaUCGG----GACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 97142 0.66 0.695907
Target:  5'- aCG-CUCGGaGGCGcUGGCgCCgGCccGGCCg -3'
miRNA:   3'- -GCaGAGCCgCCGC-AUCG-GGaCG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 41067 0.66 0.686094
Target:  5'- ----cCGGCGGCGcGGUCCgccGcCAGCCc -3'
miRNA:   3'- gcagaGCCGCCGCaUCGGGa--C-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.