miRNA display CGI


Results 101 - 120 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 47709 0.69 0.532277
Target:  5'- ---gUCGGCGGCGUcggGGgCCUccucggcggacaccaGCAGCCc -3'
miRNA:   3'- gcagAGCCGCCGCA---UCgGGA---------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 38909 0.69 0.524609
Target:  5'- -uUCUcCGGCGcGCG-GGCCCgcgcgccaagccgGCGGCCg -3'
miRNA:   3'- gcAGA-GCCGC-CGCaUCGGGa------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 24392 0.69 0.518885
Target:  5'- uCGUCggCGGCGGgGcGGUCCUGgGGgCu -3'
miRNA:   3'- -GCAGa-GCCGCCgCaUCGGGACgUCgG- -5'
23588 3' -60.8 NC_005261.1 + 59498 0.69 0.507513
Target:  5'- gCGcCagCGGCGGCGgucgcacgcgcGCCCUggaGCAGCCc -3'
miRNA:   3'- -GCaGa-GCCGCCGCau---------CGGGA---CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 2605 0.69 0.490659
Target:  5'- cCGcCgUCGGCGGCGgGGCCgCcggGCGGCa -3'
miRNA:   3'- -GCaG-AGCCGCCGCaUCGG-Ga--CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 38687 0.67 0.626607
Target:  5'- aGUCUCGcGCuGGCcgGGCCCaagcCGGCCa -3'
miRNA:   3'- gCAGAGC-CG-CCGcaUCGGGac--GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 66032 0.67 0.627602
Target:  5'- gCGUCguagUCGGCGGCcacggccagccccgGGCCC-GCGGUCc -3'
miRNA:   3'- -GCAG----AGCCGCCGca------------UCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 103925 0.66 0.70567
Target:  5'- gGUCggGcGCGGCGUcuGCCagacgCUGCAGCg -3'
miRNA:   3'- gCAGagC-CGCCGCAu-CGG-----GACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 57506 0.66 0.702747
Target:  5'- aCGUCcCGGCGGCG-GGCCUucUuccacaggcacggcGCGGCg -3'
miRNA:   3'- -GCAGaGCCGCCGCaUCGGG--A--------------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 128791 0.66 0.695907
Target:  5'- uGUCUgGGCgcccgggcccgcGGCGgGGCUcgcgCUGCGGCUg -3'
miRNA:   3'- gCAGAgCCG------------CCGCaUCGG----GACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 97142 0.66 0.695907
Target:  5'- aCG-CUCGGaGGCGcUGGCgCCgGCccGGCCg -3'
miRNA:   3'- -GCaGAGCCgCCGC-AUCG-GGaCG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 41067 0.66 0.686094
Target:  5'- ----cCGGCGGCGcGGUCCgccGcCAGCCc -3'
miRNA:   3'- gcagaGCCGCCGCaUCGGGa--C-GUCGG- -5'
23588 3' -60.8 NC_005261.1 + 136758 0.66 0.676239
Target:  5'- ---gUCGGUGGUGaggAGCUCgUGCAGCg -3'
miRNA:   3'- gcagAGCCGCCGCa--UCGGG-ACGUCGg -5'
23588 3' -60.8 NC_005261.1 + 69657 0.66 0.676239
Target:  5'- uCGUCaacCGGCGGCuggggGUGGCCg-GCAucacGCCg -3'
miRNA:   3'- -GCAGa--GCCGCCG-----CAUCGGgaCGU----CGG- -5'
23588 3' -60.8 NC_005261.1 + 4580 0.66 0.676239
Target:  5'- gGUC-CGGCGG-GgcGCCCcccgGC-GCCa -3'
miRNA:   3'- gCAGaGCCGCCgCauCGGGa---CGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 57593 0.66 0.666349
Target:  5'- gCGUCgaugugccaccUGGCGGCGcacgccgcgcAGCCCUccggguggcucaGCAGCCg -3'
miRNA:   3'- -GCAGa----------GCCGCCGCa---------UCGGGA------------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 118858 0.66 0.656434
Target:  5'- -----gGGCGGCGc-GCCC-GCGGCCc -3'
miRNA:   3'- gcagagCCGCCGCauCGGGaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 83745 0.67 0.6465
Target:  5'- gCGUCgaggUGGCGGCGc-GCCa--CGGCCg -3'
miRNA:   3'- -GCAGa---GCCGCCGCauCGGgacGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 49297 0.67 0.6465
Target:  5'- aGcCcgCGGCGGUG-AGCgCCgcGCAGCCc -3'
miRNA:   3'- gCaGa-GCCGCCGCaUCG-GGa-CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 83373 0.67 0.636555
Target:  5'- aCGUCggcgagcgCGGCGaGCGcGGCCU--CGGCCg -3'
miRNA:   3'- -GCAGa-------GCCGC-CGCaUCGGGacGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.