miRNA display CGI


Results 21 - 40 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 3' -60.8 NC_005261.1 + 99486 0.66 0.695907
Target:  5'- gGUC-CGGCucuGGCGcgggcccgGGCUCUGCGGgCg -3'
miRNA:   3'- gCAGaGCCG---CCGCa-------UCGGGACGUCgG- -5'
23588 3' -60.8 NC_005261.1 + 36808 0.66 0.695907
Target:  5'- cCGcCUCGGCGGCcgacGUcgugacgcaagcGGCgCUGCuGCUg -3'
miRNA:   3'- -GCaGAGCCGCCG----CA------------UCGgGACGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 37872 0.66 0.695907
Target:  5'- aCGcCU-GGCGGCGcgugcuggAGCCCgaGCuGGCCa -3'
miRNA:   3'- -GCaGAgCCGCCGCa-------UCGGGa-CG-UCGG- -5'
23588 3' -60.8 NC_005261.1 + 97142 0.66 0.695907
Target:  5'- aCG-CUCGGaGGCGcUGGCgCCgGCccGGCCg -3'
miRNA:   3'- -GCaGAGCCgCCGC-AUCG-GGaCG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 133812 0.66 0.695907
Target:  5'- -cUC-CGGCgaGGCcUGGCCCgGCAGCg -3'
miRNA:   3'- gcAGaGCCG--CCGcAUCGGGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 59270 0.66 0.695907
Target:  5'- gCGUCgcaCGGCGuGuCGccGCCCaGCAGCg -3'
miRNA:   3'- -GCAGa--GCCGC-C-GCauCGGGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 93836 0.66 0.695907
Target:  5'- cCGcCg-GGCGGCGccGCCgaGCAGUCc -3'
miRNA:   3'- -GCaGagCCGCCGCauCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 97220 0.66 0.695907
Target:  5'- aCG-CUCGGaGGCGcUGGCgCCgGCccGGCCg -3'
miRNA:   3'- -GCaGAGCCgCCGC-AUCG-GGaCG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 128791 0.66 0.695907
Target:  5'- uGUCUgGGCgcccgggcccgcGGCGgGGCUcgcgCUGCGGCUg -3'
miRNA:   3'- gCAGAgCCG------------CCGCaUCGG----GACGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 29295 0.66 0.695907
Target:  5'- -cUC-CGGCgaGGCcUGGCCCgGCAGCg -3'
miRNA:   3'- gcAGaGCCG--CCGcAUCGGGaCGUCGg -5'
23588 3' -60.8 NC_005261.1 + 101574 0.66 0.695907
Target:  5'- gCG-CUCGGCGcGCGccgUGGCCUccgcGCGcGCCg -3'
miRNA:   3'- -GCaGAGCCGC-CGC---AUCGGGa---CGU-CGG- -5'
23588 3' -60.8 NC_005261.1 + 19213 0.66 0.694928
Target:  5'- aCGUCcgcucauUCGuCGGCGcgGGCCCaGCAGgCCc -3'
miRNA:   3'- -GCAG-------AGCcGCCGCa-UCGGGaCGUC-GG- -5'
23588 3' -60.8 NC_005261.1 + 18682 0.66 0.694928
Target:  5'- --aCUUGcggccccGCGGCGgGGCCUUGCucGGCCg -3'
miRNA:   3'- gcaGAGC-------CGCCGCaUCGGGACG--UCGG- -5'
23588 3' -60.8 NC_005261.1 + 122163 0.66 0.686094
Target:  5'- uCGUCUacacgcgcCGGCucGGCGcgGGCCC-GCuGCCc -3'
miRNA:   3'- -GCAGA--------GCCG--CCGCa-UCGGGaCGuCGG- -5'
23588 3' -60.8 NC_005261.1 + 132696 0.66 0.686094
Target:  5'- cCGUCUCGcuGCGcGcCGaAGCCg-GCGGCCu -3'
miRNA:   3'- -GCAGAGC--CGC-C-GCaUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 28178 0.66 0.686094
Target:  5'- cCGUCUCGcuGCGcGcCGaAGCCg-GCGGCCu -3'
miRNA:   3'- -GCAGAGC--CGC-C-GCaUCGGgaCGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 68762 0.66 0.686094
Target:  5'- ---aUCGcGCGGaUGUGGCCCUcgacgcgccGCAGCUc -3'
miRNA:   3'- gcagAGC-CGCC-GCAUCGGGA---------CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 92933 0.66 0.686094
Target:  5'- gGUCUCGG-GGCGguacaaGGCCagccgguacgGCAGCa -3'
miRNA:   3'- gCAGAGCCgCCGCa-----UCGGga--------CGUCGg -5'
23588 3' -60.8 NC_005261.1 + 35908 0.66 0.686094
Target:  5'- cCGcCgCGGCaGCGcGGCCCcgcgccGCAGCCc -3'
miRNA:   3'- -GCaGaGCCGcCGCaUCGGGa-----CGUCGG- -5'
23588 3' -60.8 NC_005261.1 + 106858 0.66 0.686094
Target:  5'- cCGcCUgGGgGGCGggcGUCC-GCGGCCu -3'
miRNA:   3'- -GCaGAgCCgCCGCau-CGGGaCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.