Results 41 - 60 of 126 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 54238 | 0.67 | 0.875774 |
Target: 5'- cGCGGCGcGCGcucaUGUGCA-GCgCGCCc- -3' miRNA: 3'- -CGCCGCaCGU----ACAUGUaCGaGCGGuc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 52226 | 0.67 | 0.88014 |
Target: 5'- cGCGGCGcUGCGgccgGUACGguuucgugggaggGCgcuguccgCGCCGGg -3' miRNA: 3'- -CGCCGC-ACGUa---CAUGUa------------CGa-------GCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 130637 | 0.67 | 0.883004 |
Target: 5'- cGCGGgGcGCGcGUGC--GCUCGCCGa -3' miRNA: 3'- -CGCCgCaCGUaCAUGuaCGAGCGGUc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 133900 | 0.67 | 0.890003 |
Target: 5'- cGCGGCGcgcugcuggccuggcUGC-UGUACGUcGCguucguguaccugCGCCAGg -3' miRNA: 3'- -CGCCGC---------------ACGuACAUGUA-CGa------------GCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 103864 | 0.67 | 0.890003 |
Target: 5'- cGCGGCGgcgGCGgg-GCGgcGC-CGCCGGg -3' miRNA: 3'- -CGCCGCa--CGUacaUGUa-CGaGCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 38494 | 0.67 | 0.894762 |
Target: 5'- gGCGGCGUcgacuggaGCGUcGUAUAaggcgcgcgcuggcUGCgcgCGCCGGg -3' miRNA: 3'- -CGCCGCA--------CGUA-CAUGU--------------ACGa--GCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 15065 | 0.67 | 0.896766 |
Target: 5'- cGCGGCGggGUcgGggguCAgGCUCGCCc- -3' miRNA: 3'- -CGCCGCa-CGuaCau--GUaCGAGCGGuc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 43373 | 0.67 | 0.896766 |
Target: 5'- uGCGGCG-GCAUcggccucgcgGUGCcgGCaccguccaggCGCCGGg -3' miRNA: 3'- -CGCCGCaCGUA----------CAUGuaCGa---------GCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 59794 | 0.67 | 0.896766 |
Target: 5'- gGCGGCGggcgGCAg--GCcgGCguggCGCCGc -3' miRNA: 3'- -CGCCGCa---CGUacaUGuaCGa---GCGGUc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 74282 | 0.67 | 0.875774 |
Target: 5'- cGCGGCGgGCGgg-GCGgucGC-CGCCGGg -3' miRNA: 3'- -CGCCGCaCGUacaUGUa--CGaGCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 63731 | 0.67 | 0.875774 |
Target: 5'- aGCGGCGUGCGcaUGgccgcgGCGgcguagGC-CGCCGu -3' miRNA: 3'- -CGCCGCACGU--ACa-----UGUa-----CGaGCGGUc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 3217 | 0.67 | 0.875774 |
Target: 5'- cGCGGCcgcGUGCGg--GCccGCcgCGCCAGg -3' miRNA: 3'- -CGCCG---CACGUacaUGuaCGa-GCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 28106 | 0.67 | 0.875774 |
Target: 5'- gGCGGgGUGCGUcaGCGUcaggacggGCgCGCCGGg -3' miRNA: 3'- -CGCCgCACGUAcaUGUA--------CGaGCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 31906 | 0.67 | 0.868319 |
Target: 5'- gGCGGCGggGcCGUGgcuCAcgacggaagacUGCUCGCCGa -3' miRNA: 3'- -CGCCGCa-C-GUACau-GU-----------ACGAGCGGUc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 127992 | 0.67 | 0.860643 |
Target: 5'- cGCGGCG-GCGaGUGCGcggGCcCGCCuGg -3' miRNA: 3'- -CGCCGCaCGUaCAUGUa--CGaGCGGuC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 82850 | 0.67 | 0.860643 |
Target: 5'- aGCGGCGgcgGCAgcgGCG-GCggGCCAGg -3' miRNA: 3'- -CGCCGCa--CGUacaUGUaCGagCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 31980 | 0.67 | 0.860643 |
Target: 5'- aGCGGCGgcgGCGgcccgGUAgGgcgcgGCggccgCGCCAGg -3' miRNA: 3'- -CGCCGCa--CGUa----CAUgUa----CGa----GCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 39118 | 0.67 | 0.8961 |
Target: 5'- cCGGUGUaCGUGUACGaguuuucUGC-CGCCGGc -3' miRNA: 3'- cGCCGCAcGUACAUGU-------ACGaGCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 74478 | 0.67 | 0.863739 |
Target: 5'- cGCGGCGUGCcUGgGCGggaucucgGCgcucuucggggcggCGCCGGg -3' miRNA: 3'- -CGCCGCACGuACaUGUa-------CGa-------------GCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 134411 | 0.67 | 0.872819 |
Target: 5'- -aGGUGUGCGUGaACugcugcuccacgcUGCUCGCgGGg -3' miRNA: 3'- cgCCGCACGUACaUGu------------ACGAGCGgUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home