Results 121 - 126 of 126 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 23588 | 5' | -54.9 | NC_005261.1 | + | 13756 | 0.75 | 0.441523 |
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Target: 5'- uCGGCG-GCAUGUACGUGggCGCCc- -3' miRNA: 3'- cGCCGCaCGUACAUGUACgaGCGGuc -5' |
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| 23588 | 5' | -54.9 | NC_005261.1 | + | 118257 | 0.76 | 0.388256 |
|
Target: 5'- uGCGGCGUGCcgGUGCAcUGCgCGCa-- -3' miRNA: 3'- -CGCCGCACGuaCAUGU-ACGaGCGguc -5' |
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| 23588 | 5' | -54.9 | NC_005261.1 | + | 71380 | 0.78 | 0.331689 |
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Target: 5'- gGUGGCGUGCGUGUGCAccaaGUUC-CCGGa -3' miRNA: 3'- -CGCCGCACGUACAUGUa---CGAGcGGUC- -5' |
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| 23588 | 5' | -54.9 | NC_005261.1 | + | 31016 | 0.79 | 0.295138 |
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Target: 5'- cUGGCGaGCAUGUACAUGCaCGCCGc -3' miRNA: 3'- cGCCGCaCGUACAUGUACGaGCGGUc -5' |
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| 23588 | 5' | -54.9 | NC_005261.1 | + | 29298 | 0.8 | 0.237388 |
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Target: 5'- cGCGGCGUGCGUGgGCGUGCUgGgCCc- -3' miRNA: 3'- -CGCCGCACGUACaUGUACGAgC-GGuc -5' |
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| 23588 | 5' | -54.9 | NC_005261.1 | + | 107211 | 1.11 | 0.002126 |
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Target: 5'- gGCGGCGUGCAUGUACAUGCUCGCCAGg -3' miRNA: 3'- -CGCCGCACGUACAUGUACGAGCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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