Results 21 - 40 of 126 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 16755 | 0.71 | 0.652289 |
Target: 5'- cGUGGCGgcaGCcgGUACGccgaggaGCUCGCCAu -3' miRNA: 3'- -CGCCGCa--CGuaCAUGUa------CGAGCGGUc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 34211 | 0.71 | 0.683406 |
Target: 5'- cGCGGCGcGCA-GUACAgcGCgcgCGCCAu -3' miRNA: 3'- -CGCCGCaCGUaCAUGUa-CGa--GCGGUc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 43171 | 0.71 | 0.703947 |
Target: 5'- cGCgGGCGUGCAUGgcggaggGCGgucUGCggCGCCGa -3' miRNA: 3'- -CG-CCGCACGUACa------UGU---ACGa-GCGGUc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 100608 | 0.7 | 0.744195 |
Target: 5'- cGCGGcCGcGCAgGUGCAggucccGCUCGCaCAGg -3' miRNA: 3'- -CGCC-GCaCGUaCAUGUa-----CGAGCG-GUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 36968 | 0.7 | 0.744195 |
Target: 5'- cGCGGCGcagaGCucgGUGCggGCUCcaGCCGGa -3' miRNA: 3'- -CGCCGCa---CGua-CAUGuaCGAG--CGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 46816 | 0.7 | 0.744195 |
Target: 5'- gGCGGCGUcGCGcuccACGUcCUCGCCGGg -3' miRNA: 3'- -CGCCGCA-CGUaca-UGUAcGAGCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 4409 | 0.7 | 0.754027 |
Target: 5'- gGCGGCGcgcUGCcgGgcCAgGcCUCGCCGGa -3' miRNA: 3'- -CGCCGC---ACGuaCauGUaC-GAGCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 104663 | 0.7 | 0.754027 |
Target: 5'- cGCuGGCGgGCGUGUGC-UGCggcagCGCCuGg -3' miRNA: 3'- -CG-CCGCaCGUACAUGuACGa----GCGGuC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 112461 | 0.7 | 0.714127 |
Target: 5'- uGCGGgcCGUGCuaaacAUGcgcgGCAUGCUCGCCc- -3' miRNA: 3'- -CGCC--GCACG-----UACa---UGUACGAGCGGuc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 126044 | 0.7 | 0.724235 |
Target: 5'- gGCGGCGcUGCAUGgugGCGgcggcGCUgGCCu- -3' miRNA: 3'- -CGCCGC-ACGUACa--UGUa----CGAgCGGuc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 72570 | 0.7 | 0.744195 |
Target: 5'- gGCGGCGcUGCGc--GCcgGCgcgCGCCAGa -3' miRNA: 3'- -CGCCGC-ACGUacaUGuaCGa--GCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 87492 | 0.7 | 0.714127 |
Target: 5'- cGCGGcCGUGC-UGgcgcGCAggcGCUCGCCGc -3' miRNA: 3'- -CGCC-GCACGuACa---UGUa--CGAGCGGUc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 70947 | 0.7 | 0.754027 |
Target: 5'- cGCGGCG-GCggGgggGCugcUGCUgGCCGGg -3' miRNA: 3'- -CGCCGCaCGuaCa--UGu--ACGAgCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 21399 | 0.7 | 0.754027 |
Target: 5'- cGCGGCGgggacgGCcacGUACAccUGCUCGUCGu -3' miRNA: 3'- -CGCCGCa-----CGua-CAUGU--ACGAGCGGUc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 108926 | 0.7 | 0.754027 |
Target: 5'- gGCGGCGcgcUGCcgGgcCAgGcCUCGCCGGa -3' miRNA: 3'- -CGCCGC---ACGuaCauGUaC-GAGCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 19575 | 0.69 | 0.772393 |
Target: 5'- gGCGGUugauucuccagagGUGCGUGUGCAgguccucGCgguagcgCGCCAGc -3' miRNA: 3'- -CGCCG-------------CACGUACAUGUa------CGa------GCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 55715 | 0.69 | 0.781875 |
Target: 5'- gGCGGCcacGCGUGUcucuaugucgcggGCGUGCU-GCCGGa -3' miRNA: 3'- -CGCCGca-CGUACA-------------UGUACGAgCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 84230 | 0.69 | 0.761813 |
Target: 5'- cGCGGCG-GCGccUGUGCGccgcgcgcuggaGCUCGCCGc -3' miRNA: 3'- -CGCCGCaCGU--ACAUGUa-----------CGAGCGGUc -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 134903 | 0.69 | 0.792143 |
Target: 5'- cGCGGCGcGgGUGgagguggaggACAUGCggGCCGGg -3' miRNA: 3'- -CGCCGCaCgUACa---------UGUACGagCGGUC- -5' |
|||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 63369 | 0.69 | 0.773347 |
Target: 5'- cGCGGUGcGgGUGUGCcgGgUCGCCc- -3' miRNA: 3'- -CGCCGCaCgUACAUGuaCgAGCGGuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home