miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 134903 0.69 0.792143
Target:  5'- cGCGGCGcGgGUGgagguggaggACAUGCggGCCGGg -3'
miRNA:   3'- -CGCCGCaCgUACa---------UGUACGagCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 30386 0.69 0.792143
Target:  5'- cGCGGCGcGgGUGgagguggaggACAUGCggGCCGGg -3'
miRNA:   3'- -CGCCGCaCgUACa---------UGUACGagCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 87466 0.69 0.792143
Target:  5'- cGCGGUGUGCGcugaggGUGCGggUGCgggCGCgAGc -3'
miRNA:   3'- -CGCCGCACGUa-----CAUGU--ACGa--GCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 98134 0.69 0.763748
Target:  5'- uGCGGCGggcugGCGUGcgACGcGCU-GCCAGc -3'
miRNA:   3'- -CGCCGCa----CGUACa-UGUaCGAgCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 84230 0.69 0.761813
Target:  5'- cGCGGCG-GCGccUGUGCGccgcgcgcuggaGCUCGCCGc -3'
miRNA:   3'- -CGCCGCaCGU--ACAUGUa-----------CGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 55715 0.69 0.781875
Target:  5'- gGCGGCcacGCGUGUcucuaugucgcggGCGUGCU-GCCGGa -3'
miRNA:   3'- -CGCCGca-CGUACA-------------UGUACGAgCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 4216 0.68 0.852753
Target:  5'- cGCGGCGgcgGCGUaGUugAggguguaGC-CGCCGGg -3'
miRNA:   3'- -CGCCGCa--CGUA-CAugUa------CGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 134220 0.68 0.819193
Target:  5'- gGCGGCcUGCGUGgcCAUGagcCGCCGc -3'
miRNA:   3'- -CGCCGcACGUACauGUACga-GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 65469 0.68 0.827868
Target:  5'- cGCGGCcgccGUGC-UGgGCAUGCggccCGCCAu -3'
miRNA:   3'- -CGCCG----CACGuACaUGUACGa---GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 89196 0.68 0.827868
Target:  5'- gGCGGC-UGCcUGcGCGUGCcCGCCGc -3'
miRNA:   3'- -CGCCGcACGuACaUGUACGaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 106468 0.68 0.836358
Target:  5'- cGCGGCGcGCAgGUACAcGUgCGCCu- -3'
miRNA:   3'- -CGCCGCaCGUaCAUGUaCGaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 1951 0.68 0.836358
Target:  5'- cGCGGCGcGCAgGUACAcGUgCGCCu- -3'
miRNA:   3'- -CGCCGCaCGUaCAUGUaCGaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 119250 0.68 0.819193
Target:  5'- cGCGGCcaucuucGCAUGcGCGcuccUGCUCGCUGGg -3'
miRNA:   3'- -CGCCGca-----CGUACaUGU----ACGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 106546 0.68 0.827868
Target:  5'- gGCGGCGgccGCGUccggGCcgGCgcgCGCCGGc -3'
miRNA:   3'- -CGCCGCa--CGUAca--UGuaCGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 29703 0.68 0.819193
Target:  5'- gGCGGCcUGCGUGgcCAUGagcCGCCGc -3'
miRNA:   3'- -CGCCGcACGUACauGUACga-GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 131723 0.68 0.850346
Target:  5'- gGCGGCGcGCuucgGUGgGUGCUgcacgcggacggcaCGCCGGc -3'
miRNA:   3'- -CGCCGCaCGua--CAUgUACGA--------------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 82187 0.68 0.819193
Target:  5'- cGCGGCGUGCGcagaagccguUGUGCA--C-CGCCAc -3'
miRNA:   3'- -CGCCGCACGU----------ACAUGUacGaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 134098 0.68 0.836358
Target:  5'- uCGGCGcGCcgGcGCGcGCUCGCCGc -3'
miRNA:   3'- cGCCGCaCGuaCaUGUaCGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 52815 0.68 0.844656
Target:  5'- gGCGGCGcGCGcgcgcGUGCucggGCUCGCgGGc -3'
miRNA:   3'- -CGCCGCaCGUa----CAUGua--CGAGCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 36278 0.68 0.844656
Target:  5'- gGCGGcCGUGCc----CcgGCUCGCCAa -3'
miRNA:   3'- -CGCC-GCACGuacauGuaCGAGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.