Results 61 - 80 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 23475 | 0.67 | 0.860643 |
Target: 5'- cGCGGCG-GCGaGUGCGcggGCcCGCCuGg -3' miRNA: 3'- -CGCCGCaCGUaCAUGUa--CGaGCGGuC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 81296 | 0.67 | 0.860643 |
Target: 5'- cGCGGCGcGCAcGUcCGUGCcgUUGUCGGg -3' miRNA: 3'- -CGCCGCaCGUaCAuGUACG--AGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 14855 | 0.68 | 0.852753 |
Target: 5'- gGCGGCGgcGCAUcGcGCA-GUUCGCCAu -3' miRNA: 3'- -CGCCGCa-CGUA-CaUGUaCGAGCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 4216 | 0.68 | 0.852753 |
Target: 5'- cGCGGCGgcgGCGUaGUugAggguguaGC-CGCCGGg -3' miRNA: 3'- -CGCCGCa--CGUA-CAugUa------CGaGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 131723 | 0.68 | 0.850346 |
Target: 5'- gGCGGCGcGCuucgGUGgGUGCUgcacgcggacggcaCGCCGGc -3' miRNA: 3'- -CGCCGCaCGua--CAUgUACGA--------------GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 52815 | 0.68 | 0.844656 |
Target: 5'- gGCGGCGcGCGcgcgcGUGCucggGCUCGCgGGc -3' miRNA: 3'- -CGCCGCaCGUa----CAUGua--CGAGCGgUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 36278 | 0.68 | 0.844656 |
Target: 5'- gGCGGcCGUGCc----CcgGCUCGCCAa -3' miRNA: 3'- -CGCC-GCACGuacauGuaCGAGCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 100499 | 0.68 | 0.844656 |
Target: 5'- aGCGGCGUGCcgucgGCGUccagguagccGCgcggCGCCAGc -3' miRNA: 3'- -CGCCGCACGuaca-UGUA----------CGa---GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 1951 | 0.68 | 0.836358 |
Target: 5'- cGCGGCGcGCAgGUACAcGUgCGCCu- -3' miRNA: 3'- -CGCCGCaCGUaCAUGUaCGaGCGGuc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 134098 | 0.68 | 0.836358 |
Target: 5'- uCGGCGcGCcgGcGCGcGCUCGCCGc -3' miRNA: 3'- cGCCGCaCGuaCaUGUaCGAGCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 106468 | 0.68 | 0.836358 |
Target: 5'- cGCGGCGcGCAgGUACAcGUgCGCCu- -3' miRNA: 3'- -CGCCGCaCGUaCAUGUaCGaGCGGuc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 124603 | 0.68 | 0.827868 |
Target: 5'- gGCGGCGUGCG---GCAUaGCgCGuCCAGc -3' miRNA: 3'- -CGCCGCACGUacaUGUA-CGaGC-GGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 106546 | 0.68 | 0.827868 |
Target: 5'- gGCGGCGgccGCGUccggGCcgGCgcgCGCCGGc -3' miRNA: 3'- -CGCCGCa--CGUAca--UGuaCGa--GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 65469 | 0.68 | 0.827868 |
Target: 5'- cGCGGCcgccGUGC-UGgGCAUGCggccCGCCAu -3' miRNA: 3'- -CGCCG----CACGuACaUGUACGa---GCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 89196 | 0.68 | 0.827868 |
Target: 5'- gGCGGC-UGCcUGcGCGUGCcCGCCGc -3' miRNA: 3'- -CGCCGcACGuACaUGUACGaGCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 29703 | 0.68 | 0.819193 |
Target: 5'- gGCGGCcUGCGUGgcCAUGagcCGCCGc -3' miRNA: 3'- -CGCCGcACGUACauGUACga-GCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 119250 | 0.68 | 0.819193 |
Target: 5'- cGCGGCcaucuucGCAUGcGCGcuccUGCUCGCUGGg -3' miRNA: 3'- -CGCCGca-----CGUACaUGU----ACGAGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 25111 | 0.68 | 0.819193 |
Target: 5'- cGCGGCGggcgagaGCAUGUcCAUGC-CGagcuCCAGg -3' miRNA: 3'- -CGCCGCa------CGUACAuGUACGaGC----GGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 134220 | 0.68 | 0.819193 |
Target: 5'- gGCGGCcUGCGUGgcCAUGagcCGCCGc -3' miRNA: 3'- -CGCCGcACGUACauGUACga-GCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 82187 | 0.68 | 0.819193 |
Target: 5'- cGCGGCGUGCGcagaagccguUGUGCA--C-CGCCAc -3' miRNA: 3'- -CGCCGCACGU----------ACAUGUacGaGCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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