Results 41 - 60 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 43171 | 0.71 | 0.703947 |
Target: 5'- cGCgGGCGUGCAUGgcggaggGCGgucUGCggCGCCGa -3' miRNA: 3'- -CG-CCGCACGUACa------UGU---ACGa-GCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 43373 | 0.67 | 0.896766 |
Target: 5'- uGCGGCG-GCAUcggccucgcgGUGCcgGCaccguccaggCGCCGGg -3' miRNA: 3'- -CGCCGCaCGUA----------CAUGuaCGa---------GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 45623 | 0.66 | 0.92694 |
Target: 5'- cGCGGCGcgGCGcg-GCggGCccgCGCCGGa -3' miRNA: 3'- -CGCCGCa-CGUacaUGuaCGa--GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 46451 | 0.66 | 0.92694 |
Target: 5'- aCGGCGUGCGUGaACAggccCUCGaagcgCAGg -3' miRNA: 3'- cGCCGCACGUACaUGUac--GAGCg----GUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 46816 | 0.7 | 0.744195 |
Target: 5'- gGCGGCGUcGCGcuccACGUcCUCGCCGGg -3' miRNA: 3'- -CGCCGCA-CGUaca-UGUAcGAGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 49598 | 0.69 | 0.763748 |
Target: 5'- cGCGGCGcUGCugucaaaGUACAcgcacaGCUCGCCGu -3' miRNA: 3'- -CGCCGC-ACGua-----CAUGUa-----CGAGCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 52226 | 0.67 | 0.88014 |
Target: 5'- cGCGGCGcUGCGgccgGUACGguuucgugggaggGCgcuguccgCGCCGGg -3' miRNA: 3'- -CGCCGC-ACGUa---CAUGUa------------CGa-------GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 52815 | 0.68 | 0.844656 |
Target: 5'- gGCGGCGcGCGcgcgcGUGCucggGCUCGCgGGc -3' miRNA: 3'- -CGCCGCaCGUa----CAUGua--CGAGCGgUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 52997 | 0.72 | 0.641871 |
Target: 5'- gGCGGCGcccagGCGUcgGcGCA-GCUCGCCAGc -3' miRNA: 3'- -CGCCGCa----CGUA--CaUGUaCGAGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 54068 | 0.66 | 0.910186 |
Target: 5'- cGCGGCGgcggugguggcagggGCGUGgcCGagGCcCGCCAGc -3' miRNA: 3'- -CGCCGCa--------------CGUACauGUa-CGaGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 54238 | 0.67 | 0.875774 |
Target: 5'- cGCGGCGcGCGcucaUGUGCA-GCgCGCCc- -3' miRNA: 3'- -CGCCGCaCGU----ACAUGUaCGaGCGGuc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 55510 | 0.67 | 0.875774 |
Target: 5'- cGCGGCuGgacgGCGUGgacUGCcUGCUCGUgGGg -3' miRNA: 3'- -CGCCG-Ca---CGUAC---AUGuACGAGCGgUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 55715 | 0.69 | 0.781875 |
Target: 5'- gGCGGCcacGCGUGUcucuaugucgcggGCGUGCU-GCCGGa -3' miRNA: 3'- -CGCCGca-CGUACA-------------UGUACGAgCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 58123 | 0.67 | 0.875774 |
Target: 5'- cGCGGCGcccaaGCcgGUACcgcgGCgcgcgCGCCGGu -3' miRNA: 3'- -CGCCGCa----CGuaCAUGua--CGa----GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 59063 | 0.67 | 0.890003 |
Target: 5'- uCGGCGcGC-UGgcCAcggggcugcuggUGCUCGCCGGg -3' miRNA: 3'- cGCCGCaCGuACauGU------------ACGAGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 59794 | 0.67 | 0.896766 |
Target: 5'- gGCGGCGggcgGCAg--GCcgGCguggCGCCGc -3' miRNA: 3'- -CGCCGCa---CGUacaUGuaCGa---GCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 60067 | 0.69 | 0.798585 |
Target: 5'- aGCGGCGgccgguccgcgggcUGCGUGggcaGCAgcacGCUgGCCAGc -3' miRNA: 3'- -CGCCGC--------------ACGUACa---UGUa---CGAgCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 63369 | 0.69 | 0.773347 |
Target: 5'- cGCGGUGcGgGUGUGCcgGgUCGCCc- -3' miRNA: 3'- -CGCCGCaCgUACAUGuaCgAGCGGuc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 63731 | 0.67 | 0.875774 |
Target: 5'- aGCGGCGUGCGcaUGgccgcgGCGgcguagGC-CGCCGu -3' miRNA: 3'- -CGCCGCACGU--ACa-----UGUa-----CGaGCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 64922 | 0.74 | 0.488922 |
Target: 5'- cGCGGCGUGCu----CcUGCUCGCCGc -3' miRNA: 3'- -CGCCGCACGuacauGuACGAGCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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