miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 87114 0.74 0.488922
Target:  5'- cGCGGCGUuguagaagggccGCggGUACGcgagcUGCUCGCCGa -3'
miRNA:   3'- -CGCCGCA------------CGuaCAUGU-----ACGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 87466 0.69 0.792143
Target:  5'- cGCGGUGUGCGcugaggGUGCGggUGCgggCGCgAGc -3'
miRNA:   3'- -CGCCGCACGUa-----CAUGU--ACGa--GCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 87492 0.7 0.714127
Target:  5'- cGCGGcCGUGC-UGgcgcGCAggcGCUCGCCGc -3'
miRNA:   3'- -CGCC-GCACGuACa---UGUa--CGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 88455 0.67 0.8961
Target:  5'- cGCGccGCGUgaGCGUGUGggcgggcCGUGCcgCGCCGGa -3'
miRNA:   3'- -CGC--CGCA--CGUACAU-------GUACGa-GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 89196 0.68 0.827868
Target:  5'- gGCGGC-UGCcUGcGCGUGCcCGCCGc -3'
miRNA:   3'- -CGCCGcACGuACaUGUACGaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 90795 0.67 0.875774
Target:  5'- -gGGCGccUGUcgG-ACGUGUUCGCCAc -3'
miRNA:   3'- cgCCGC--ACGuaCaUGUACGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 91711 0.66 0.90329
Target:  5'- cCGGC-UGCAag-GCcgGCUCGCCGc -3'
miRNA:   3'- cGCCGcACGUacaUGuaCGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 93773 0.66 0.915608
Target:  5'- cGCGGCGUcGCAgcagGUGCccccgGgaCGCCGc -3'
miRNA:   3'- -CGCCGCA-CGUa---CAUGua---CgaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 98134 0.69 0.763748
Target:  5'- uGCGGCGggcugGCGUGcgACGcGCU-GCCAGc -3'
miRNA:   3'- -CGCCGCa----CGUACa-UGUaCGAgCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 98816 0.66 0.907713
Target:  5'- gGCGGCGUGCcggaagacggggggGUgggcGUACAgcgGgUCGCCGc -3'
miRNA:   3'- -CGCCGCACG--------------UA----CAUGUa--CgAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 99027 0.74 0.488922
Target:  5'- aUGGCG-GCuaccgGUGCGgcUGCUCGCCGGg -3'
miRNA:   3'- cGCCGCaCGua---CAUGU--ACGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 99095 0.69 0.801322
Target:  5'- cGCGGCGcGCAgcgGCuUGCUCGCg-- -3'
miRNA:   3'- -CGCCGCaCGUacaUGuACGAGCGguc -5'
23588 5' -54.9 NC_005261.1 + 100499 0.68 0.844656
Target:  5'- aGCGGCGUGCcgucgGCGUccagguagccGCgcggCGCCAGc -3'
miRNA:   3'- -CGCCGCACGuaca-UGUA----------CGa---GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 100608 0.7 0.744195
Target:  5'- cGCGGcCGcGCAgGUGCAggucccGCUCGCaCAGg -3'
miRNA:   3'- -CGCC-GCaCGUaCAUGUa-----CGAGCG-GUC- -5'
23588 5' -54.9 NC_005261.1 + 101473 0.66 0.915608
Target:  5'- cCGGCGUGCAgggGCGccaGCUgGCCuGg -3'
miRNA:   3'- cGCCGCACGUacaUGUa--CGAgCGGuC- -5'
23588 5' -54.9 NC_005261.1 + 101997 0.66 0.921398
Target:  5'- aCGGCGUcGUAgugGcGCA-GCUCGCCGc -3'
miRNA:   3'- cGCCGCA-CGUa--CaUGUaCGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 103864 0.67 0.890003
Target:  5'- cGCGGCGgcgGCGgg-GCGgcGC-CGCCGGg -3'
miRNA:   3'- -CGCCGCa--CGUacaUGUa-CGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 104223 0.66 0.909571
Target:  5'- cGCGGCGcGCAc---CGUGCccuccagCGCCAGa -3'
miRNA:   3'- -CGCCGCaCGUacauGUACGa------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 104663 0.7 0.754027
Target:  5'- cGCuGGCGgGCGUGUGC-UGCggcagCGCCuGg -3'
miRNA:   3'- -CG-CCGCaCGUACAUGuACGa----GCGGuC- -5'
23588 5' -54.9 NC_005261.1 + 105249 0.67 0.896766
Target:  5'- uGCGGCG-GCAUccgcgcgACAgGCUCGgCGGg -3'
miRNA:   3'- -CGCCGCaCGUAca-----UGUaCGAGCgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.