miRNA display CGI


Results 101 - 120 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 106468 0.68 0.836358
Target:  5'- cGCGGCGcGCAgGUACAcGUgCGCCu- -3'
miRNA:   3'- -CGCCGCaCGUaCAUGUaCGaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 106546 0.68 0.827868
Target:  5'- gGCGGCGgccGCGUccggGCcgGCgcgCGCCGGc -3'
miRNA:   3'- -CGCCGCa--CGUAca--UGuaCGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 107211 1.11 0.002126
Target:  5'- gGCGGCGUGCAUGUACAUGCUCGCCAGg -3'
miRNA:   3'- -CGCCGCACGUACAUGUACGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 108926 0.7 0.754027
Target:  5'- gGCGGCGcgcUGCcgGgcCAgGcCUCGCCGGa -3'
miRNA:   3'- -CGCCGC---ACGuaCauGUaC-GAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 112461 0.7 0.714127
Target:  5'- uGCGGgcCGUGCuaaacAUGcgcgGCAUGCUCGCCc- -3'
miRNA:   3'- -CGCC--GCACG-----UACa---UGUACGAGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 118257 0.76 0.388256
Target:  5'- uGCGGCGUGCcgGUGCAcUGCgCGCa-- -3'
miRNA:   3'- -CGCCGCACGuaCAUGU-ACGaGCGguc -5'
23588 5' -54.9 NC_005261.1 + 119250 0.68 0.819193
Target:  5'- cGCGGCcaucuucGCAUGcGCGcuccUGCUCGCUGGg -3'
miRNA:   3'- -CGCCGca-----CGUACaUGU----ACGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 121068 0.73 0.579486
Target:  5'- cGCGGUGUGCGcgGcGCcgGCggcCGCCAGc -3'
miRNA:   3'- -CGCCGCACGUa-CaUGuaCGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 121223 0.66 0.909571
Target:  5'- cGCGGCc-GCGUGcgACAUGCUgGCg-- -3'
miRNA:   3'- -CGCCGcaCGUACa-UGUACGAgCGguc -5'
23588 5' -54.9 NC_005261.1 + 124349 0.74 0.49869
Target:  5'- gGCGGCGUGUAcuuccUGUACGaccggGC-CGCCGGc -3'
miRNA:   3'- -CGCCGCACGU-----ACAUGUa----CGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 124603 0.68 0.827868
Target:  5'- gGCGGCGUGCG---GCAUaGCgCGuCCAGc -3'
miRNA:   3'- -CGCCGCACGUacaUGUA-CGaGC-GGUC- -5'
23588 5' -54.9 NC_005261.1 + 126044 0.7 0.724235
Target:  5'- gGCGGCGcUGCAUGgugGCGgcggcGCUgGCCu- -3'
miRNA:   3'- -CGCCGC-ACGUACa--UGUa----CGAgCGGuc -5'
23588 5' -54.9 NC_005261.1 + 126341 0.74 0.508544
Target:  5'- cGCGGCGggcGCGcGUGCGggcggGCUCGCCc- -3'
miRNA:   3'- -CGCCGCa--CGUaCAUGUa----CGAGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 126628 0.73 0.589829
Target:  5'- gGCGGUGUGCGgagaGUGCGUGCgguauaCGgCGGg -3'
miRNA:   3'- -CGCCGCACGUa---CAUGUACGa-----GCgGUC- -5'
23588 5' -54.9 NC_005261.1 + 127992 0.67 0.860643
Target:  5'- cGCGGCG-GCGaGUGCGcggGCcCGCCuGg -3'
miRNA:   3'- -CGCCGCaCGUaCAUGUa--CGaGCGGuC- -5'
23588 5' -54.9 NC_005261.1 + 128290 0.66 0.921398
Target:  5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3'
miRNA:   3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 128347 0.66 0.921398
Target:  5'- -gGGCGgGCcgGcUAgGguggGCUCGCCGGg -3'
miRNA:   3'- cgCCGCaCGuaC-AUgUa---CGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 130637 0.67 0.883004
Target:  5'- cGCGGgGcGCGcGUGC--GCUCGCCGa -3'
miRNA:   3'- -CGCCgCaCGUaCAUGuaCGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 131723 0.68 0.850346
Target:  5'- gGCGGCGcGCuucgGUGgGUGCUgcacgcggacggcaCGCCGGc -3'
miRNA:   3'- -CGCCGCaCGua--CAUgUACGA--------------GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 133127 0.74 0.486979
Target:  5'- aCGGCGUGCGcgucucccugcgGUGCGcGCUCGCCGc -3'
miRNA:   3'- cGCCGCACGUa-----------CAUGUaCGAGCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.