Results 121 - 126 of 126 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23588 | 5' | -54.9 | NC_005261.1 | + | 133900 | 0.67 | 0.890003 |
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Target: 5'- cGCGGCGcgcugcuggccuggcUGC-UGUACGUcGCguucguguaccugCGCCAGg -3' miRNA: 3'- -CGCCGC---------------ACGuACAUGUA-CGa------------GCGGUC- -5' |
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| 23588 | 5' | -54.9 | NC_005261.1 | + | 134098 | 0.68 | 0.836358 |
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Target: 5'- uCGGCGcGCcgGcGCGcGCUCGCCGc -3' miRNA: 3'- cGCCGCaCGuaCaUGUaCGAGCGGUc -5' |
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| 23588 | 5' | -54.9 | NC_005261.1 | + | 134220 | 0.68 | 0.819193 |
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Target: 5'- gGCGGCcUGCGUGgcCAUGagcCGCCGc -3' miRNA: 3'- -CGCCGcACGUACauGUACga-GCGGUc -5' |
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| 23588 | 5' | -54.9 | NC_005261.1 | + | 134411 | 0.67 | 0.872819 |
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Target: 5'- -aGGUGUGCGUGaACugcugcuccacgcUGCUCGCgGGg -3' miRNA: 3'- cgCCGCACGUACaUGu------------ACGAGCGgUC- -5' |
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| 23588 | 5' | -54.9 | NC_005261.1 | + | 134903 | 0.69 | 0.792143 |
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Target: 5'- cGCGGCGcGgGUGgagguggaggACAUGCggGCCGGg -3' miRNA: 3'- -CGCCGCaCgUACa---------UGUACGagCGGUC- -5' |
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| 23588 | 5' | -54.9 | NC_005261.1 | + | 136909 | 0.67 | 0.890003 |
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Target: 5'- cGCGGCG-GCGUcccGgagcGCGUGCcgcCGCCGGc -3' miRNA: 3'- -CGCCGCaCGUA---Ca---UGUACGa--GCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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