miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23588 5' -54.9 NC_005261.1 + 72468 0.66 0.92694
Target:  5'- cGCGGCGaGCGcGaGCGcgGCcagCGCCAGg -3'
miRNA:   3'- -CGCCGCaCGUaCaUGUa-CGa--GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 72025 0.66 0.915608
Target:  5'- gGCGGCGUGC-UGgc---GCUgGCCGa -3'
miRNA:   3'- -CGCCGCACGuACauguaCGAgCGGUc -5'
23588 5' -54.9 NC_005261.1 + 71380 0.78 0.331689
Target:  5'- gGUGGCGUGCGUGUGCAccaaGUUC-CCGGa -3'
miRNA:   3'- -CGCCGCACGUACAUGUa---CGAGcGGUC- -5'
23588 5' -54.9 NC_005261.1 + 70947 0.7 0.754027
Target:  5'- cGCGGCG-GCggGgggGCugcUGCUgGCCGGg -3'
miRNA:   3'- -CGCCGCaCGuaCa--UGu--ACGAgCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 67332 0.67 0.896766
Target:  5'- cGUGGCGcGCAaGUGCAcggccaugUGCacCGCCGGc -3'
miRNA:   3'- -CGCCGCaCGUaCAUGU--------ACGa-GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 65469 0.68 0.827868
Target:  5'- cGCGGCcgccGUGC-UGgGCAUGCggccCGCCAu -3'
miRNA:   3'- -CGCCG----CACGuACaUGUACGa---GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 64922 0.74 0.488922
Target:  5'- cGCGGCGUGCu----CcUGCUCGCCGc -3'
miRNA:   3'- -CGCCGCACGuacauGuACGAGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 63731 0.67 0.875774
Target:  5'- aGCGGCGUGCGcaUGgccgcgGCGgcguagGC-CGCCGu -3'
miRNA:   3'- -CGCCGCACGU--ACa-----UGUa-----CGaGCGGUc -5'
23588 5' -54.9 NC_005261.1 + 63369 0.69 0.773347
Target:  5'- cGCGGUGcGgGUGUGCcgGgUCGCCc- -3'
miRNA:   3'- -CGCCGCaCgUACAUGuaCgAGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 60067 0.69 0.798585
Target:  5'- aGCGGCGgccgguccgcgggcUGCGUGggcaGCAgcacGCUgGCCAGc -3'
miRNA:   3'- -CGCCGC--------------ACGUACa---UGUa---CGAgCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 59794 0.67 0.896766
Target:  5'- gGCGGCGggcgGCAg--GCcgGCguggCGCCGc -3'
miRNA:   3'- -CGCCGCa---CGUacaUGuaCGa---GCGGUc -5'
23588 5' -54.9 NC_005261.1 + 59063 0.67 0.890003
Target:  5'- uCGGCGcGC-UGgcCAcggggcugcuggUGCUCGCCGGg -3'
miRNA:   3'- cGCCGCaCGuACauGU------------ACGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 58123 0.67 0.875774
Target:  5'- cGCGGCGcccaaGCcgGUACcgcgGCgcgcgCGCCGGu -3'
miRNA:   3'- -CGCCGCa----CGuaCAUGua--CGa----GCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 55715 0.69 0.781875
Target:  5'- gGCGGCcacGCGUGUcucuaugucgcggGCGUGCU-GCCGGa -3'
miRNA:   3'- -CGCCGca-CGUACA-------------UGUACGAgCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 55510 0.67 0.875774
Target:  5'- cGCGGCuGgacgGCGUGgacUGCcUGCUCGUgGGg -3'
miRNA:   3'- -CGCCG-Ca---CGUAC---AUGuACGAGCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 54238 0.67 0.875774
Target:  5'- cGCGGCGcGCGcucaUGUGCA-GCgCGCCc- -3'
miRNA:   3'- -CGCCGCaCGU----ACAUGUaCGaGCGGuc -5'
23588 5' -54.9 NC_005261.1 + 54068 0.66 0.910186
Target:  5'- cGCGGCGgcggugguggcagggGCGUGgcCGagGCcCGCCAGc -3'
miRNA:   3'- -CGCCGCa--------------CGUACauGUa-CGaGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 52997 0.72 0.641871
Target:  5'- gGCGGCGcccagGCGUcgGcGCA-GCUCGCCAGc -3'
miRNA:   3'- -CGCCGCa----CGUA--CaUGUaCGAGCGGUC- -5'
23588 5' -54.9 NC_005261.1 + 52815 0.68 0.844656
Target:  5'- gGCGGCGcGCGcgcgcGUGCucggGCUCGCgGGc -3'
miRNA:   3'- -CGCCGCaCGUa----CAUGua--CGAGCGgUC- -5'
23588 5' -54.9 NC_005261.1 + 52226 0.67 0.88014
Target:  5'- cGCGGCGcUGCGgccgGUACGguuucgugggaggGCgcuguccgCGCCGGg -3'
miRNA:   3'- -CGCCGC-ACGUa---CAUGUa------------CGa-------GCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.