Results 101 - 120 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23588 | 5' | -54.9 | NC_005261.1 | + | 12770 | 0.66 | 0.921398 |
Target: 5'- gGCGGCGgugGCggGgg---GCUCGUCGGc -3' miRNA: 3'- -CGCCGCa--CGuaCauguaCGAGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 101997 | 0.66 | 0.921398 |
Target: 5'- aCGGCGUcGUAgugGcGCA-GCUCGCCGc -3' miRNA: 3'- cGCCGCA-CGUa--CaUGUaCGAGCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 46451 | 0.66 | 0.92694 |
Target: 5'- aCGGCGUGCGUGaACAggccCUCGaagcgCAGg -3' miRNA: 3'- cGCCGCACGUACaUGUac--GAGCg----GUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 45623 | 0.66 | 0.92694 |
Target: 5'- cGCGGCGcgGCGcg-GCggGCccgCGCCGGa -3' miRNA: 3'- -CGCCGCa-CGUacaUGuaCGa--GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 91711 | 0.66 | 0.90329 |
Target: 5'- cCGGC-UGCAag-GCcgGCUCGCCGc -3' miRNA: 3'- cGCCGcACGUacaUGuaCGAGCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 105249 | 0.67 | 0.896766 |
Target: 5'- uGCGGCG-GCAUccgcgcgACAgGCUCGgCGGg -3' miRNA: 3'- -CGCCGCaCGUAca-----UGUaCGAGCgGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 59794 | 0.67 | 0.896766 |
Target: 5'- gGCGGCGggcgGCAg--GCcgGCguggCGCCGc -3' miRNA: 3'- -CGCCGCa---CGUacaUGuaCGa---GCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 63731 | 0.67 | 0.875774 |
Target: 5'- aGCGGCGUGCGcaUGgccgcgGCGgcguagGC-CGCCGu -3' miRNA: 3'- -CGCCGCACGU--ACa-----UGUa-----CGaGCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 74282 | 0.67 | 0.875774 |
Target: 5'- cGCGGCGgGCGgg-GCGgucGC-CGCCGGg -3' miRNA: 3'- -CGCCGCaCGUacaUGUa--CGaGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 54238 | 0.67 | 0.875774 |
Target: 5'- cGCGGCGcGCGcucaUGUGCA-GCgCGCCc- -3' miRNA: 3'- -CGCCGCaCGU----ACAUGUaCGaGCGGuc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 52226 | 0.67 | 0.88014 |
Target: 5'- cGCGGCGcUGCGgccgGUACGguuucgugggaggGCgcuguccgCGCCGGg -3' miRNA: 3'- -CGCCGC-ACGUa---CAUGUa------------CGa-------GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 130637 | 0.67 | 0.883004 |
Target: 5'- cGCGGgGcGCGcGUGC--GCUCGCCGa -3' miRNA: 3'- -CGCCgCaCGUaCAUGuaCGAGCGGUc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 133900 | 0.67 | 0.890003 |
Target: 5'- cGCGGCGcgcugcuggccuggcUGC-UGUACGUcGCguucguguaccugCGCCAGg -3' miRNA: 3'- -CGCCGC---------------ACGuACAUGUA-CGa------------GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 103864 | 0.67 | 0.890003 |
Target: 5'- cGCGGCGgcgGCGgg-GCGgcGC-CGCCGGg -3' miRNA: 3'- -CGCCGCa--CGUacaUGUa-CGaGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 32392 | 0.67 | 0.890003 |
Target: 5'- cGCGGCG-GCGUcccGgagcGCGUGCcgcCGCCGGc -3' miRNA: 3'- -CGCCGCaCGUA---Ca---UGUACGa--GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 38494 | 0.67 | 0.894762 |
Target: 5'- gGCGGCGUcgacuggaGCGUcGUAUAaggcgcgcgcuggcUGCgcgCGCCGGg -3' miRNA: 3'- -CGCCGCA--------CGUA-CAUGU--------------ACGa--GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 39118 | 0.67 | 0.8961 |
Target: 5'- cCGGUGUaCGUGUACGaguuuucUGC-CGCCGGc -3' miRNA: 3'- cGCCGCAcGUACAUGU-------ACGaGCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 88455 | 0.67 | 0.8961 |
Target: 5'- cGCGccGCGUgaGCGUGUGggcgggcCGUGCcgCGCCGGa -3' miRNA: 3'- -CGC--CGCA--CGUACAU-------GUACGa-GCGGUC- -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 15065 | 0.67 | 0.896766 |
Target: 5'- cGCGGCGggGUcgGggguCAgGCUCGCCc- -3' miRNA: 3'- -CGCCGCa-CGuaCau--GUaCGAGCGGuc -5' |
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23588 | 5' | -54.9 | NC_005261.1 | + | 43373 | 0.67 | 0.896766 |
Target: 5'- uGCGGCG-GCAUcggccucgcgGUGCcgGCaccguccaggCGCCGGg -3' miRNA: 3'- -CGCCGCaCGUA----------CAUGuaCGa---------GCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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